Evidence map›Paper›PMID 41000629›Full record

ArticlebioRxiv : the preprint server for biology2025

Cell-cycle dynamics of nascent transcription and mature RNA accumulation are concordant in normal fibroblasts.

Melanie Gucwa, Kohta Ikegami

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Melanie GucwaDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA.
Kohta IkegamiDivision of Molecular Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA.ORCID 0000-0002-0405-1193

Funding

Mechanisms in Lamin A function in gene regulationR33AG054770 · NIA · UNIVERSITY OF CHICAGO · PI IKEGAMI, KOHTA · 2019 to 2021
$1.6M
Single-cell and single-molecule profiling of protein-DNA interactions by MACHAR21HG012423 · NHGRI · UNIVERSITY OF CHICAGO · PI IKEGAMI, KOHTA, POTT, SEBASTIAN · 2022 to 2023
$462k
Mechanisms in Lamin A function in gene regulationR21AG054770 · NIA · UNIVERSITY OF CHICAGO · PI IKEGAMI, KOHTA · 2017 to 2018
$410k
NHGRI NIH HHS R21 HG012423NIA NIH HHS R21 AG054770NIA NIH HHS R33 AG054770
6 · The paper itself

Abstract

Cell-cycle dynamics of gene expression are fundamental to life, yet their origin remains unclear. A prevailing model, derived from cancer cells, posits that transcription occurs in one cell cycle phase, while mature RNA accumulates in subsequent phases, suggesting temporal segregation of transcriptional regulation and RNA abundance. Whether this paradigm applies to normal human cells is unclear. Here, we co-profiled nascent transcription and mature RNAs in cycling human fibroblasts. The two dynamics were strongly concordant, with no evidence of a lag extending cell-cycle phases. Our data suggest a widespread transcription-to-maturation lag is not a general feature of human cells.

Identifiers

PMID41000629
PMCPMC12458243

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.