Evidence map›Paper›PMID 40999549›Full record

ArticleAnimal microbiome2025

Genomic prediction of symbiotic interactions between two Endozoicomonas clades and their coral host, Acropora loripes.

Cecilie R Gotze, Kshitij Tandon, Gayle K Philip, Ashley M Dungan, Justin Maire, Lone Høj, Linda L Blackall, Madeleine J H van Oppen

Abstract read
In one paragraph

Article in Animal microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Cecilie R GotzeSchool of BioSciences, The University of Melbourne, Parkville, VIC, 3010, Australia. cecilieravngoetze@gmail.com.ORCID https://orcid.org/0000-0002-8816-6894
Kshitij TandonMelbourne Integrative Genomics, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0003-3022-0808
Gayle K PhilipMelbourne Bioinformatics, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0002-2671-5093
Ashley M DunganSchool of BioSciences, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0003-0958-2177
Justin MaireSchool of BioSciences, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0003-1976-2323
Lone HøjAustralian Institute of Marine Science, Townsville, QLD, 4810, Australia.ORCID http://orcid.org/0000-0002-7781-8754
Linda L BlackallSchool of BioSciences, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0002-8848-7698
Madeleine J H van OppenSchool of BioSciences, The University of Melbourne, Parkville, VIC, 3010, Australia.ORCID http://orcid.org/0000-0003-4607-0744

Funding

Australian Research Council DP210100630
6 · The paper itself

Abstract

backgroundThe bacterial genus Endozoicomonas is a predominant member of the coral microbiome, widely recognised for its ubiquity and ability to form high-density aggregates within coral tissues. Hence, investigating its metabolic interplay with coral hosts offers critical insights into its ecological roles and contributions to coral health and resilience.

resultsUsing long- and short-read whole-genome sequencing of 11 Endozoicomonas strains from Acropora loripes, genome sizes were found to range between 5.8 and 7.1 Mbp. Phylogenomic analysis identified two distinct clades within the family Endozoicomonadaceae. Metabolic reconstruction uncovered clade-specific pathways, including the degradation of holobiont-derived carbon and lipids (e.g., galactose, starch, triacylglycerol, D-glucuronate), the latter of which suggests involvement of Endozoicomonas in host 'sex-type' steroid hormone metabolism. A clade-specific type 6 Secretion System (T6SS) and predicted effector molecules were identified, potentially facilitating coral-bacterium symbiosis. Additionally, genomic analyses revealed diverse phosphorus acquisition strategies, implicating Endozoicomonas in holobiont phosphorus cycling and stress responses.

conclusionsThis study reveals clade-specific genomic signatures of Endozoicomonas supporting its mutualistic lifestyle within corals. Findings suggests possible roles in nutrient cycling, reproductive health, and stress resilience, offering novel insights into coral holobiont functioning.

Indexed as

Comparative genomicsCoralEndozoicomonasEnvironmental microbiologyMicrobiomePhylogenomicsSymbiosis

Identifiers

PMID40999549
PMCPMC12465592

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.