Evidence map›Paper›PMID 40998877›Full record

ArticleScientific reports2025

Microbiome composition in grapevine trunk diseases symptomatic plants is modulated by genotype and region.

Filipe Azevedo-Nogueira, Ana Gaspar, Kateřina Štůsková, Ana Margarida Fortes, Ales Eichmeier, Cecília Rego, David Gramaje, Paula Martins-Lopes

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. AJournal of fungi (Basel, Switzerland) · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Filipe Azevedo-NogueiraDNA & RNA Sensing Lab, Department of Genetics and Biotechnology, Universidade de Trás-os-Montes e Alto Douro, 5000-901, Vila Real, Portugal.ORCID http://orcid.org/0000-0002-8356-3700
Ana GasparLEAF - Linking Landscape, Environment, Agriculture and Food-Research Center, Associated Laboratory TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, Lisboa, Portugal.ORCID http://orcid.org/0000-0002-1053-591X
Kateřina ŠtůskováFaculty of Horticulture, Mendeleum-Institute of Genetics, Mendel University in Brno, Valticka 334, 69144, Lednice, Czech Republic.ORCID http://orcid.org/0000-0002-5778-8439
Ana Margarida FortesBioISI - Instituto de Biosistemas e Ciências Integrativas, Faculdade de Ciências, Universidade de Lisboa, 1749-016, Lisboa, Portugal.ORCID http://orcid.org/0000-0001-7552-0164
Ales EichmeierFaculty of Horticulture, Mendeleum-Institute of Genetics, Mendel University in Brno, Valticka 334, 69144, Lednice, Czech Republic.ORCID http://orcid.org/0000-0001-7358-3903
Cecília RegoLEAF - Linking Landscape, Environment, Agriculture and Food-Research Center, Associated Laboratory TERRA, Instituto Superior de Agronomia, Universidade de Lisboa, Tapada da Ajuda, Lisboa, Portugal.ORCID http://orcid.org/0000-0001-8952-537X
David GramajeInstituto de Ciencias de la Vid y del Vino (ICVV), Spanish National Research Council (CSIC), University of La Rioja and Government of La Rioja, 26007, Logroño, Spain.ORCID http://orcid.org/0000-0003-1755-3413
Paula Martins-LopesDNA & RNA Sensing Lab, Department of Genetics and Biotechnology, Universidade de Trás-os-Montes e Alto Douro, 5000-901, Vila Real, Portugal. plopes@utad.pt.ORCID http://orcid.org/0000-0001-8229-0117

Funding

Portuguese Science and Technology Foundation http://doi.org/10.54499/PTDC/BAA-DIG/1079/2020Portuguese Science and Technology Foundation https://doi.org/10.54499/2020.04459.BDResearch Infrastructure for Young Scientists CZ.02.1.01/0.0/0.0/16_017/0002334
6 · The paper itself

Abstract

Grapevine health is influenced by microbiome composition, which is affected by region and several plant features such as cultivar, age and rootstock. Grapevine Trunk Diseases (GTDs) are caused by several wood-colonizing fungi, leading to imbalances in microbiome composition. Here, we performed next-generation sequencing of fungal and bacterial microbiomes present in trunk samples of ninety-seven symptomatic grapevines, from two cultivars (cv. Touriga Nacional and cv. Aragonez), collected in eight Portuguese wine-producing regions. The influence of wine-producing regions, grapevine genotype, rootstock, and age was analyzed. Results indicate that microbiome composition is largely influenced by region and cultivar, with more pronounced alterations in cv. Touriga Nacional. Furthermore, relationships between microbes were characterized, revealing that several genera could engage in competitive interactions with the pathogens. We postulate that environmental conditions associated to the wine-producing regions modulate trunk endosphere and microbiome composition. Plant cultivar, age and rootstock also influence the trunk microbiome assembly, leading to distinct taxa composition in the trunk, and also altered microbe relationships.

Indexed as

MicrobiotaPlant DiseasesVitisBacteriaFungiGenotypeHigh-Throughput Nucleotide SequencingWineGrapevine trunk diseasesMetabarcodingMicrobiome changesNext generation sequencingTrunk endosphereVitis vinifera L

Identifiers

PMID40998877
PMCPMC12464181

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.