Evidence map›Paper›PMID 40997780›Full record

ArticleThe journal of physical chemistry. B2025

Toward Improving Multiple Time Step QM/MM Simulations with Δ-Machine Learning.

Reilly Osadchey, Kwangho Nam, Qiang Cui

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Reilly OsadcheyDepartment of Chemistry, Boston University, Boston, Massachusetts 02215, United States.ORCID 0000-0001-6011-1771
Kwangho NamDepartment of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, Texas 76019, United States.ORCID 0000-0003-0723-7839
Qiang CuiDepartment of Chemistry, Boston University, Boston, Massachusetts 02215, United States.ORCID 0000-0001-6214-5211

Funding

Computational Analysis of Enzyme Catalysis and RegulationR35GM141930 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI Qiang Cui · 2021 to 2026
$2.7M
Multiscale Modeling of Protein Kinase Structure, Catalysis and AllosteryR01GM132481 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI Kwangho Nam · 2019 to 2026
$1.7M
Multiscale ab initio QM/MM and Machine Learning Methods for Accelerated Free Energy SimulationsR44GM133270 · NIGMS · Q-CHEM, INC. · PI FENG, XINTIAN · 2023 to 2024
$1.3M
Multiscale ab initio QM/MM and machine learning methods for accelerated free energy simulationsR43GM133270 · NIGMS · Q-CHEM, INC. · PI EPIFANOVSKY, EVGENY · 2019 to 2019
$132k
NIGMS NIH HHS R01 GM132481NIGMS NIH HHS R35 GM141930NIGMS NIH HHS R43 GM133270NIGMS NIH HHS R44 GM133270
6 · The paper itself

Abstract

Semiempirical methods are popular for QM/MM simulations of chemical reactions in the condensed phase due to their immense speedup compared to higher-level

Identifiers

PMID40997780
PMCPMC13045619

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.