ArticleDatabase : the journal of biological databases and curation2025
GExplore 1.5: a comprehensive Caenorhabditis elegans database for the analysis of gene function with a new user-friendly web interface.
Article in Database : the journal of biological databases and curation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
1 citing paper in PubMed.
- Synaptic proteomics identifies cathepsin B as a regulator of synapse remodelling during learning.bioRxiv : the preprint server for biology · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
GExplore is an online tool to assist with large-scale data mining of selected datasets related to gene and protein function in Caenorhabditis elegans. Here, we describe the current version GExplore 1.5, which contains new datasets and display options as well as a completely redesigned web interface. GExplore now consists of six databases. The gene database contains protein domain information, general expression, and phenotype data as well as interacting genes, gene ontology annotations, and disease associations. The mutation database contains a curated list of more than 200 000 mutations affecting the protein sequences of all protein-coding genes. The protein database contains proteome data from 19 different nematode species, four genetic model organisms and the human proteome for comparison. Three genome-scale RNAseq expression databases contain expression profiles of different developmental stages from embryo to adult, tissues-specific expression profiles at the L2 stage, and expression profiles of the major tissues in the developing embryo at five different time points from gastrulation to the beginning of terminal differentiation. The web-based user interface has been completely redeveloped for the current version. The search interfaces allow users to explore content of the individual databases in detail. The interactive display pages enable the user to fine-tune the results, display additional data, and download the results. GExplore is a tool to quickly obtain an overview of biological and biochemical functions of large groups of genes or identify genes with a certain combination of features for further experimental analysis. Database URL: https://genome.science.sfu.ca/gexplore.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.