Evidence map›Paper›PMID 40994002›Full record

ArticlePlant communications2025

Fluctuations in nitrate availability impact cytokinin biosynthesis through histone modifications of IPT3 in Arabidopsis roots for growth acclimation.

Fanny Bellegarde, Olivia Tjahjono, Mika Yoshino-Kida, Takatoshi Kiba, Miki Shibutani, Mei Kuriyama, Louis J Irving, Mikiko Kojima, Kazuki Miyata, Hitoshi Sakakibara

Abstract read
In one paragraph

Article in Plant communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Effects of Fertilizer Rates on Growth ofLife (Basel, Switzerland) · 2026
    Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fanny BellegardeGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan; Institute for Advanced Research, Nagoya University, Aichi 464-8601, Japan. Electronic address: fannyb@agr.nagoya-u.ac.jp.
Olivia TjahjonoGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Mika Yoshino-KidaGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Takatoshi KibaGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Miki ShibutaniGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Mei KuriyamaGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Louis J IrvingInstitute of Life and Environmental Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba 305-8577, Japan.
Mikiko KojimaRIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan.
Kazuki MiyataGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan.
Hitoshi SakakibaraGraduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8601, Japan; RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Nitrate availability in soil is highly variable and often a limiting factor for crop growth. Plants must acclimate rapidly to these fluctuations. The phytohormone cytokinin (CK) plays a pivotal role in nitrate signaling as a secondary growth regulator. However, the mechanisms that regulate CK action in response to fluctuating nitrate levels remain poorly understood. Here, we show that chromatin modification of IPT3, a key gene in CK biosynthesis, is crucial for growth acclimation to variable nitrate supply. Transcriptional regulation of IPT3 drives CK output in response to nitrate availability, thereby balancing root and shoot growth. This rapid and dynamic regulation is mediated by two antagonistic histone H3 modifications: trimethylation of lysine 27 of histone H3 (H3K27me3) and H3K4me3. Using mutants defective in the deposition or removal of these modifications, we identify several chromatin effectors involved in these processes and confirm that nitrate-driven chromatin dynamics fine-tune CK biosynthesis. Our findings provide insights into the epigenetic regulatory mechanisms underlying CK biosynthesis and open new avenues faor enhancing plant acclimation to fluctuating nutrient environments.

Indexed as

AcclimatizationArabidopsisArabidopsis ProteinsCytokininsHistonesNitratesPlant RootsGene Expression Regulation, PlantPlant Growth RegulatorsArabidopsis ProteinsCytokininsHistonesNitratesPlant Growth RegulatorsArabidopsiscytokinin biosynthesisgrowth acclimationhistone modificationnitrate fluctuationtranscriptional regulation

Identifiers

PMID40994002
PMCPMC12785166

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.