Evidence map›Paper›PMID 40993275›Full record

ArticleCommunications chemistry2025

Ligand-induced conformations and dynamic allosteric motions of IDO1 affecting the recruitment of a protein signaling partner.

Alice Coletti, Elisa Bianconi, Sofia Rossini, Alessandra Altomare, Andrea Butticè, Daniele Mazzoletti, Giada Mondanelli, Andrea Carotti, Giancarlo Aldini, Riccardo Miggiano and 3 more

Abstract read
In one paragraph

Article in Communications chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Alice Coletti *Department of Pharmaceutical Sciences, University of Perugia, Perugia, Italy.
Elisa Bianconi *Department of Pharmaceutical Sciences, University of Perugia, Perugia, Italy.ORCID http://orcid.org/0000-0003-4597-8056
Sofia RossiniDepartment of Medicine and Surgery, University of Perugia, Perugia, Italy.ORCID http://orcid.org/0000-0001-6429-9425
Alessandra AltomareDepartment of Pharmaceutical Sciences (DISFARM), University of Milan, Milan, Italy.
Andrea ButticèDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Novara, Italy.
Daniele MazzolettiDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Novara, Italy.
Giada MondanelliDepartment of Medicine and Surgery, University of Perugia, Perugia, Italy.
Andrea CarottiDepartment of Pharmaceutical Sciences, University of Perugia, Perugia, Italy.
Giancarlo AldiniDepartment of Pharmaceutical Sciences (DISFARM), University of Milan, Milan, Italy.
Riccardo MiggianoDepartment of Pharmaceutical Sciences, University of Piemonte Orientale, Novara, Italy.ORCID http://orcid.org/0000-0002-2159-3314
Ciriana OrabonaDepartment of Medicine and Surgery, University of Perugia, Perugia, Italy.
Joshua SalafskyDepartment of Pharmaceutical Chemistry, University of California San Francisco (UCSF), San Francisco, CA, USA.
Antonio MacchiaruloDepartment of Pharmaceutical Sciences, University of Perugia, Perugia, Italy. antonio.macchiarulo@unipg.it.ORCID http://orcid.org/0000-0001-9535-4183

Funding

Biochemical and functional characterization of a novel anti-inflammatory biogenic amineR01AI169723 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LAURA SANTAMBROGIO · 2023 to 2026
$2.9M
NIAID NIH HHS R01 AI169723
6 · The paper itself

Abstract

Indoleamine 2,3-dioxygenase 1 (IDO1) is a moonlight protein endowed with catalytic and signaling functions. It plays a pivotal role in the immune breaking mechanism leading to immunosuppression in cancer microenvironment. Intense research efforts have been devoted to designing catalytic inhibitors for developing immunotherapies, yet neglecting the enzyme's signaling function. A few IDO1 inhibitors have reached the clinical stage, including navoximod, epacadostat and linrodostat. Using second harmonic generation analysis (SHG) and molecular dynamics simulations, here we show that these clinical inhibitors can induce distinct allosteric motions in the enzyme that affect the stability of the transient signaling complex between IDO1 and Src tyrosine kinase. Next generation sequencing demonstrates that, despite sharing a similar ability to inhibit the enzyme's catalytic function, all three catalytic inhibitors modulate the IDO1's signaling function in different ways, regulating distinct transcriptomes in SKOV3 cells.

Identifiers

PMID40993275
PMCPMC12460605

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.