Evidence map›Paper›PMID 40991639›Full record

ArticlePloS one2025

The function of Anr in the differential effects of oxygen levels on biofilm development and nitrogenase performance in Pseudomonas stutzeri A1501.

Noureen Rasheed, Xize Ali, Shahab -Ud-Din, Irfan Khan, Arsalan Hassan, Muhammad Ali Rasheed

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Noureen RasheedDepartment of Biochemistry, University of Karachi, Karachi, Pakistan.
Xize AliDepartment of Microbiology, University of Karachi, Karachi, Pakistan.
Shahab -Ud-DinDepartment of Chemistry, University of Karachi, Karachi, Pakistan.
Irfan KhanCenter for Regenerative Medicine and Stem Cell Research, The Aga Khan University, Karachi, Pakistan.
Arsalan HassanDepartment of Microbiology, Basic Medical Science Institute (BMSI), Jinnah Post Graduate Medical Center (JPMC), Karachi, Pakistan.
Muhammad Ali RasheedDepartment of Microbiology, University of Karachi, Karachi, Pakistan.ORCID https://orcid.org/0009-0003-3231-3714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomonas stutzeri A1501 exhibits a rare and notable trait: nitrogenase activity, which functions under microaerophilic conditions with limited oxygen availability. Optimal biofilm formation occurs in minimal media under nitrogen-depleted conditions. Anr is a transcription regulator with a widespread influence that accelerates the process of biofilm development. The lack of Anr adversely affects nitrogen fixation by regulating the activity of nifA, nifH, and ntrC. The anr insertion mutant significantly reduced the nitrogenase activity. Nitrogenase activity demonstrated considerable variation at different oxygen concentrations. The quantitative reverse transcription polymerase chain reaction (qRT-PCR) demonstrated a reduction in the expression of nif island genes during nitrogen fixation in the absence of anr gene. The discovery revealed that different oxygen levels in the environment significantly influence nitrogenase activity and biofilm formation. The qRT-PCR investigation demonstrated an upregulation of narL gene expression during biofilm formation, suggesting that reduced oxygen levels initiate a signaling cascade that activates the anr gene. This influences both the expression of RpoS (sigma factor) genes and the process of biofilm formation.

Indexed as

Bacterial ProteinsBiofilmsNitrogenaseOxygenPseudomonas stutzeriTranscription FactorsGene Expression Regulation, BacterialNitrogen FixationSigma FactorBacterial ProteinsNitrogenaseOxygenSigma FactorTranscription Factors

Identifiers

PMID40991639
PMCPMC12459779

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.