Evidence map›Paper›PMID 40989774›Full record

ArticleTransboundary and emerging diseases2025

Whole-Genomic Characterization of Two Different PRRSV-1 Strains Isolated From a Single Pig.

Bangjun Gong, Jiahao Shi, Hu Xu, Chao Li, Lirun Xiang, Zhenyang Guo, Jinhao Li, Siyu Zhang, Zixuan Feng, Haonan Kang and 13 more

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Bangjun GongState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0009-0006-4322-6730
Jiahao ShiState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0009-0000-8653-991X
Hu XuState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0009-0008-3316-8041
Chao LiState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0009-0005-2943-7411
Lirun XiangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Zhenyang GuoState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Jinhao LiState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Siyu ZhangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Zixuan FengState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Haonan KangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Xueli ZhangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Ziyu SongState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Qian WangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Jinmei PengState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0000-0001-6943-6898
Guohui ZhouState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Chaoliang LengHenan Provincial Engineering and Technology Center of Animal Disease Diagnosis and Integrated Control, Nanyang Normal University, Nanyang 473061, China.
Kuan ZhaoCollege of Veterinary Medicine, Hebei Agricultural University, Baoding 071000, China.
Yan-Dong TangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Huairan LiuState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Tong-Qing AnState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0000-0003-4619-4587
Xuehui CaiState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.
Zhi-Jun TianState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0000-0001-7575-9984
Hongliang ZhangState Key Laboratory for Animal Disease Control and Prevention, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin 150001, China.ORCID https://orcid.org/0000-0003-0705-6800

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies have demonstrated that porcine reproductive and respiratory syndrome virus 1 (PRRSV-1) strains isolated from different farms in China have significant genomic heterogeneity, whereas strains from the same farm present a high degree of genomic similarity. In this study, primary alveolar macrophages (PAMs) and high-throughput sequencing technology were used to successfully isolate and characterize two different PRRSV-1 strains (designated TZJ3556-1 and TZJ3556-2) in a single pig from a farm in Shandong Province with a PRRSV-1 outbreak. Phylogenetic analysis based on ORF5 and complete genome sequences revealed that both TZJ3556-1 and TZJ3556-2 belong to the BJEU06-1-like subgroup. Nucleotide (nt) sequence alignment revealed that the pairwise genomic similarity between TZJ3556-1 and TZJ3556-2 was only 86.03%. Additionally, both strains exhibited the characteristic 5 (4+1) discontinuous amino acid (aa) deletion in the Nsp2 region. Recombination analysis revealed that TZJ3556-1 is one of the parental strains for the recombinant strain TZJ3556-2, contributing Nsp1β, partial Nsp2, partial ORF4, and ORF5-3'UTR genes. This study reports, for the first time, coinfection with multiple PRRSV-1 strains in a single pig and the emergence of an intrasubgroup recombinant strain within the BJEU06-1-like subgroup. The genetic diversity of PRRSV-1 strains in China is likely to become increasingly complex, and these strains may have overcome physical barriers between farms. The emergence of complex and diverse PRRSV-1 strains poses a serious challenge for the prevention and control of PRRS in China.

Indexed as

Genome, ViralPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusAnimalsChinaMacrophages, AlveolarPhylogenySwinecoinfectionhigh-throughput sequencingPRRSV-1recombination and evolutionwhole-genome characteristics

Identifiers

PMID40989774
PMCPMC12453929

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