Evidence map›Paper›PMID 40989028›Full record

ArticleiScience2025

T cell monocyte complexes exhibit distinct immune signatures during infection.

Ningxin Kang, Ashu Chawla, Hannah Hillman, Rashmi Tippalagama, Cheryl Kim, Zbigniew Mikulski, Sara McArdle, Grégory Seumois, Pandurangan Vijayanand, Thomas J Scriba and 8 more

Abstract read
In one paragraph

Article in iScience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Decoding Immune Cell Doublets in Humans: From Artifacts to Insights.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Ningxin KangCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Ashu ChawlaBioinformatics Core, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Hannah HillmanCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Rashmi TippalagamaCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Cheryl KimFlow Cytometry Core, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Zbigniew MikulskiMicroscopy Core, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Sara McArdleMicroscopy Core, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Grégory SeumoisCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Pandurangan VijayanandCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Thomas J ScribaSouth African Tuberculosis Vaccine Initiative (SATVI), Institute of Infectious Disease and Molecular Medicine, Division of Immunology, Department of Pathology, University of Cape Town, Cape Town, South Africa.
Aruna D De SilvaCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Angel BalmasedaSustainable Sciences Institute, Managua, Nicaragua.
Eva HarrisDivision of Infectious Diseases and Vaccinology, School of Public Health, University of California, Berkeley, Berkeley, CA 94720-3370, USA.
Daniela WeiskopfCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Alessandro SetteCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Cecilia Lindestam ArlehamnCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Bjoern PetersCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Julie G BurelCenter for Vaccine Innovation, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.

Funding

Single-cell atlas of lung tissue-resident memory T cells reactive to upper and lower respiratory tract pathogensU19AI118626 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2015 to 2026
$36.7M
T Cell Responses Following DENV Natural Infections and Live-Attenuated Dengue Virus VaccinationP01AI106695 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniela Weiskopf · 2015 to 2026
$34.1M
NovaSeq5000 High Throughput SequencerS10OD025052 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SEUMOIS, GREGORY · 2018 to 2018
$832k
Super-resolution confocal microscopeS10OD021831 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI LEY, KLAUS F. · 2017 to 2017
$566k
Automated Multiscale Super-resolution Confocal MicroscopeS10OD030417 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KIOSSES, BILL WILLIAM · 2022 to 2022
$514k
NIAID NIH HHS P01 AI106695NIAID NIH HHS U19 AI118626NIH HHS S10 OD021831NIH HHS S10 OD025052NIH HHS S10 OD030417
6 · The paper itself

Abstract

Communication between immune cells through direct contact is a critical feature of immune responses. Here, we developed an innovative high-throughput workflow to study the transcriptome and adaptive immune receptor repertoire of single cells forming complexes without needing bioinformatic deconvolution. We found that T cells and monocytes forming complexes in blood during active tuberculosis (TB) and dengue hold distinct transcriptomic signatures from singlets, with the upregulation of genes associated with immune activation and MHC-II complex. Additionally, in TB, T cells in complexes showed enrichment for cytotoxic T cells, higher TCR clonality, and increased immune activity at diagnosis compared to after anti-TB therapy. We also found that T cells and monocytes forming complexes were markedly enriched for "dual-expressing" cells (i.e., co-expressing T cell and monocyte genes), suggesting intercellular RNA acquisition occurs during cell-cell interactions. Thus, studying immune cell complexes at single-cell resolution provides insights into immune cell-cell interactions in the blood during infection.

Indexed as

components of the immune systemimmunologytranscriptomics

Identifiers

PMID40989028
PMCPMC12450731

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.