Evidence map›Paper›PMID 40987916›Full record

ArticleNature plants2025

Discovery of functional NLRs using expression level, high-throughput transformation and large-scale phenotyping.

Helen J Brabham, Inmaculada Hernández-Pinzón, Chizu Yanagihara, Noriko Ishikawa, Toshiyuki Komori, Oadi N Matny, Amelia Hubbard, Kamil Witek, Alexis Feist, Hironobu Numazawa and 8 more

Abstract read
In one paragraph

Article in Nature plants, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
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  11. A physical model links structure and function in the plant immune system.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Helen J BrabhamThe Sainsbury Laboratory, University of East Anglia, Norwich, UK. helen.brabham@tsl.ac.uk.ORCID 0000-0001-7132-5011
Inmaculada Hernández-PinzónThe Sainsbury Laboratory, University of East Anglia, Norwich, UK.
Chizu YanagiharaPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Noriko IshikawaPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Toshiyuki KomoriPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Oadi N MatnyDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, USA.ORCID 0000-0002-8447-2886
Amelia HubbardNIAB, Cambridge, UK.
Kamil WitekThe Sainsbury Laboratory, University of East Anglia, Norwich, UK.ORCID 0000-0003-0659-5562
Alexis FeistDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, USA.
Hironobu NumazawaPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Phon GreenThe Sainsbury Laboratory, University of East Anglia, Norwich, UK.ORCID 0000-0002-1968-0574
Antonín DreiseitlDepartment of Integrated Plant Protection, Agrotest Fyto Ltd, Kroměříž, Czech Republic.ORCID 0000-0002-9137-3210
Naoki TakemoriPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Toshihiko KomariPlant Innovation Center, Japan Tobacco Inc., Iwata, Japan.
Roger P Freedman2Blades, Evanston, IL, USA.
Brian SteffensonDepartment of Plant Pathology, University of Minnesota, St. Paul, MN, USA.ORCID 0000-0001-7961-5363
H Peter van EsseThe Sainsbury Laboratory, University of East Anglia, Norwich, UK.
Matthew J MoscouThe Sainsbury Laboratory, University of East Anglia, Norwich, UK. matthew.moscou@usda.gov.ORCID 0000-0003-2098-6818

Funding

RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BBS/E/J/000PR9795United States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) ARS 0500-00093-001-00-DUnited States Department of Agriculture | Agricultural Research Service (USDA Agricultural Research Service) CRIS #5062-21220-025-000D
6 · The paper itself

Abstract

Protecting crops from diseases is vital for the sustainable agricultural systems that are needed for food security. Introducing functional resistance genes to enhance the plant immune system is highly effective for disease resistance, but identifying new immune receptors is resource intensive. We observed that functional immune receptors of the nucleotide-binding domain leucine-rich repeat (NLR) class show a signature of high expression in uninfected plants across both monocot and dicot species. Here, by exploiting this signature combined with high-throughput transformation, we generated a wheat transgenic array of 995 NLRs from diverse grass species to identify new resistance genes for wheat. Confirming this proof of concept, we identified new resistance genes against the stem rust pathogen Puccinia graminis f. sp. tritici and the leaf rust pathogen Puccinia triticina, both major threats to wheat production. This pipeline facilitates the rapid identification of candidate NLRs and provides in planta gene validation of resistance. The accelerated discovery of new NLRs from a large gene pool of diverse and non-domesticated plant species will enhance the development of disease-resistant crops.

Indexed as

Disease ResistanceNLR ProteinsPlant DiseasesPlant ProteinsTriticumPhenotypePlants, Genetically ModifiedPucciniaTransformation, GeneticNLR ProteinsPlant Proteins

Identifiers

PMID40987916
PMCPMC12537499

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.