Evidence map›Paper›PMID 40987871›Full record

ArticleNature methods2025

Dose-efficient cryo-electron microscopy for thick samples using tilt- corrected scanning transmission electron microscopy.

Yue Yu, Katherine A Spoth, Michael Colletta, Kayla X Nguyen, Steven E Zeltmann, Xiyue S Zhang, Mohammadreza Paraan, Mykhailo Kopylov, Charlie Dubbeldam, Daniel Serwas and 3 more

Abstract read
In one paragraph

Article in Nature methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. FPGA-based scanner and SerialEM server for 4D-STEM electron tomography.Acta crystallographica. Section D, Structural biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yue YuSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA. yue.yu@czii.org.ORCID http://orcid.org/0000-0002-3248-9678
Katherine A SpothSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0003-1168-5829
Michael CollettaSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.
Kayla X NguyenSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.
Steven E ZeltmannSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0003-1790-3137
Xiyue S ZhangSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.
Mohammadreza ParaanChan Zuckerberg Institute for Advanced Biological Imaging, Redwood City, CA, USA.ORCID http://orcid.org/0000-0002-8402-0134
Mykhailo KopylovNew York Structural Biology Center, New York, NY, USA.
Charlie DubbeldamNew York Structural Biology Center, New York, NY, USA.
Daniel SerwasChan Zuckerberg Institute for Advanced Biological Imaging, Redwood City, CA, USA.
Hannah SiemsChan Zuckerberg Institute for Advanced Biological Imaging, Redwood City, CA, USA.
David A MullerSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA. david.a.muller@cornell.edu.ORCID http://orcid.org/0000-0003-4129-0473
Lena F KourkoutisSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryogenic electron microscopy is a powerful tool in structural biology. In thick specimens, challenges arise as an exponentially larger fraction of the transmitted electrons lose energy from inelastic scattering and can no longer be properly focused as a result of chromatic aberrations in the post-specimen optics. Rather than filtering out the inelastic scattering at the price of reducing potential signal, as is done in energy-filtered transmission electron microscopy, we show how a dose-efficient and unfiltered image can be rapidly obtained using tilt-corrected bright-field scanning transmission electron microscopy data collected on a pixelated detector. Enhanced contrast and a 3-5× improvement in dose efficiency are observed for two-dimensional images of intact bacterial cells and large organelles using tilt-corrected bright-field scanning transmission electron microscopy compared to energy-filtered transmission electron microscopy for thicknesses beyond 500 nm. As a proof of concept for the technique's performance in structural determination, we present a single-particle analysis map at sub-nanometer resolution for a highly symmetric virus-like particle determined from 789 particles.

Indexed as

Cryoelectron MicroscopyMicroscopy, Electron, Scanning TransmissionImage Processing, Computer-Assisted

Identifiers

PMID40987871
PMCPMC12510875

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.