Evidence map›Paper›PMID 40987610›Full record

ArticleJournal of proteome research2025

Linker H1 Histone Direct Top-Down Proteoform Analysis.

Md Shofiul Alam, Cassandra N Fuller, Kevin Jeanne Dit Fouque, Lilian Valadares Tose, Marissa A Carter, Richard M Searfoss, Francisca N de Luna Vitorino, Mariangela Kosmopoulou, Detlev Suckau, Mark E Ridgeway and 3 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Md Shofiul AlamDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
Cassandra N FullerDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
Kevin Jeanne Dit FouqueDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
Lilian Valadares ToseDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
Marissa A CarterDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
Richard M SearfossDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, United States.
Francisca N de Luna VitorinoDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, United States.
Mariangela KosmopoulouFasmatech Science & Technology, Andrea Kalvou 5, 15232 Chalandri, Greece.
Detlev SuckauBruker Daltonics GmbH & Co. KG, Bremen 28359, Germany.ORCID 0000-0002-1859-2492
Mark E RidgewayBruker Daltonics, Inc., Billerica, Massachusetts 01821, United States.
Steven L Van OrdenBruker Daltonics, Inc., Billerica, Massachusetts 01821, United States.
Benjamin A GarciaDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, United States.ORCID 0000-0002-2306-1207
Francisco Fernandez-LimaDepartment of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.ORCID 0000-0002-1283-4390

Funding

Viral modulation of epitranscriptomic mechanismsR01AI118891 · NIAID · WASHINGTON UNIVERSITY · PI GARCIA, BENJAMIN A, WEITZMAN, MATTHEW D. · 2015 to 2025
$5.4M
Quantitative mass spectrometry for comprehending epigenetic mechanisms in a new underlying neurological developmental disorderR01HD106051 · NICHD · WASHINGTON UNIVERSITY · PI Benjamin A Garcia · 2022 to 2026
$2.6M
Development and Application of Chemical Biology Approaches for Understanding Protein ArginylationR01HL177113 · NHLBI · WASHINGTON UNIVERSITY · PI Benjamin A Garcia, Zongtao Lin · 2025 to 2026
$1.2M
Development of biological structural tools for the study of protein-DNA complexesR35GM153450 · NIGMS · FLORIDA INTERNATIONAL UNIVERSITY · PI Francisco Fernandez-Lima · 2024 to 2026
$1.2M
NHLBI NIH HHS R01 HL177113NIAID NIH HHS R01 AI118891NICHD NIH HHS R01 HD106051NIGMS NIH HHS R35 GM153450
6 · The paper itself

Abstract

Linker H1 histones are highly susceptible to a variety of post-translational modifications (PTMs) that play a critical role in chromatin dynamics and gene expression. In the present work, trapped ion mobility spectrometry in tandem with ultraviolet photodissociation followed by ultrahigh resolution mass measurements, provided by a Fourier transform ion cyclotron mass spectrometer (TIMS-q-UVPD-FT-ICR MS/MS), enabled direct characterization of the linker H1 histone proteoforms. The proposed method takes advantage of the mobility and mass preseparation of core and linker histones proteoforms prior to UVPD fragmentation and consequent high mass accuracy detection in the FT-ICR MS of the fragment ions for efficient PTM assignment. The application to a bovine histone extraction resulted in the annotation of four H1 variants (H1.2, H1.3, H1.5, and H1.4V), together with their PTM distribution with high sequence coverages (up to 60%); in particular, the H1.4V variant sequence was identified via

Indexed as

HistonesProteomicsAmino Acid SequenceAnimalsCattleIon Mobility SpectrometryMolecular Sequence DataPhosphorylationProtein Processing, Post-TranslationalTandem Mass SpectrometryHistonesBottom-upChromatin remodelingde novo sequencingEADFT-ICR MSLinker histonesPost-translational modificationsProteoformTIMSTop-downUVPD

Identifiers

PMID40987610
PMCPMC12869901

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.