Evidence map›Paper›PMID 40985699›Full record

ArticleMicrobiology resource announcements2025

CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments.

Valerie A Seitz, Bridget B McGivern, Michael Shaffer, Mikayla A Borton, Aeriel D Belk, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi and 25 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Valerie A SeitzDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0003-0627-3336
Bridget B McGivernDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0001-9023-0018
Michael ShafferDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA.
Mikayla A BortonDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA.
Aeriel D BelkDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0001-9925-6986
Parsa GhadermaziDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, USA.
Cameron MartinoDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.
Liat ShenhavCenter for Studies in Physics and Biology, The Rockefeller University, New York, New York, USA.ORCID 0000-0003-1708-6050
Anru R ZhangDepartments of Biostatistics and Bioinformatics and Computer Science, Duke University, Durham, North Carolina, USA.
Pixu ShiDepartments of Biostatistics and Bioinformatics and Computer Science, Duke University, Durham, North Carolina, USA.
Alexandra EmmonsDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.
Heather DeelDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0002-9429-9052
Zhenjiang Zech XuSchool of Food Science and Technology, Nanchang University, Nanchang, Jiangsu, China.ORCID 0000-0003-1080-024X
Victoria NiecieckiDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0002-1891-5909
Qiyun ZhuSchool of Life Sciences, Arizona State University, Tempe, Arizona, USA.
Kalen CantrellDepartment of Computer Science and Engineering, UC San Diego, La Jolla, California, USA.
Asa Ben-HurDepartment of Computer Science, Colorado State University, Fort Collins, Colorado, USA.
Sasha C ReedU.S. Geological Survey, Southwest Biological Science Center, Moab, Utah, USA.
Greg C HumphryDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.
Gail AckermannDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.
Daniel McDonaldDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.ORCID 0000-0003-0876-9060
Siu Hung Joshua ChanDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, Colorado, USA.
Melissa ConnorForensic Investigation Research Station, Colorado Mesa University, Grand Junction, Colorado, USA.
Derek A BoydForensic Anthropology Center, Department of Anthropology, University of Tennessee, Knoxville, Tennessee, USA.
Jake SmithForensic Anthropology Center, Department of Anthropology, University of Tennessee, Knoxville, Tennessee, USA.
Jenna M S WatsonForensic Anthropology Center, Department of Anthropology, University of Tennessee, Knoxville, Tennessee, USA.
Giovanna VidoliForensic Anthropology Center, Department of Anthropology, University of Tennessee, Knoxville, Tennessee, USA.
Dawnie SteadmanForensic Anthropology Center, Department of Anthropology, University of Tennessee, Knoxville, Tennessee, USA.
Aaron M LynneDepartment of Biological Sciences, Sam Houston State University, Huntsville, Texas, USA.
Sibyl BucheliDepartment of Biological Sciences, Sam Houston State University, Huntsville, Texas, USA.
David O CarterLaboratory of Forensic Taphonomy, Forensic Sciences Unit, School of Natural Sciences and Mathematics, Chaminade University of Honolulu, Honolulu, Hawaii, USA.ORCID 0000-0003-1885-5237
Zachary M BurchamDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0003-1600-9643
Rob KnightDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA.ORCID 0000-0002-0975-9019
Kelly C WrightonDepartment of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0003-0434-4217
Jessica L MetcalfDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA.ORCID 0000-0001-8374-8046

Funding

Predoctoral Training in Quantitative Cell & Molecular BiologyT32GM132057 · NIGMS · COLORADO STATE UNIVERSITY · PI Karen Marie Dobos, Brian Munsky · 2019 to 2026
$2.9M
BLRD VA I01 BX000194NIGMS NIH HHS T32 GM132057
6 · The paper itself

Abstract

Microbial degradation of organic matter is a fundamental Earth process, yet a mechanistic understanding of microbial metabolisms and successional ecology involved in decomposition remains poorly understood. Here, we announce the recovery of 277 cadaver-associated soil metagenome-assembled genomes to enhance our understanding of vertebrate decomposition microbial processes.

Indexed as

decompositionforensicsMAGmetagenomicsnecrobiomevertebrates

Identifiers

PMID40985699
PMCPMC12613977

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.