Evidence map›Paper›PMID 40985614›Full record

ArticleeLife2025

Multiphase separation in postsynaptic density regulated by membrane geometry via interaction valency and volume.

Risa Yamada, Giovanni B Brandani, Shoji Takada

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Risa YamadaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID https://orcid.org/0009-0000-3573-4045
Giovanni B BrandaniDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID https://orcid.org/0000-0003-3379-0187
Shoji TakadaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID https://orcid.org/0000-0001-5385-7217

Funding

Japan Society for the Promotion of Science 21H02441Japan Society for the Promotion of Science 24K01991Japan Society for the Promotion of Science 24KJ1449
6 · The paper itself

Abstract

Biomolecular condensates are found at various cellular locations, nucleus, cytoplasm, and membrane. These condensates often contain multiple components and can separate into multiple phases with various morphologies such as core-shell droplets, implicating functional roles. Demixing and arrangements of condensates are determined by competitive interactions and their locations. Recent studies reported a puzzling multiphase morphology in postsynaptic density components: AMPA receptor, NMDA receptor, PSD-95, and CaMKII. The multiphase morphology appears reversed when transitioning from the solution to the membrane. Using this system as a model, we study the multiphase behavior of condensates in solution (3D) and domain formation on and beneath the membrane (2D) and elucidate molecular mechanisms behind the puzzle. Our simulations reproduce the core-shell structure in 3D in vitro solution, where AMPA-receptor/PSD-95 form the core and NMDA-receptor/CaMKII form the shell, triggered by CaMKII activation. Then, we obtain a reversed morphology on the membrane. This reversal is primarily driven by CaMKII's high valency and large volume. We find that, in solution, CaMKII's non-specific volume interaction dominates, while on the membrane, specific multivalent interactions overcome the excluded volume interaction of CaMKII. The layered structures of receptors and CaMKIIs reduce the excluded volume effects of CaMKII on receptors, making the multivalent interaction dominant. These findings highlight the differences between condensate formation in solution and membrane domain formation, modulated by their layered arrangement.

Indexed as

Cell MembranePost-Synaptic DensityAnimalsCalcium-Calmodulin-Dependent Protein Kinase Type 2Disks Large Homolog 4 ProteinReceptors, AMPAReceptors, N-Methyl-D-AspartateCalcium-Calmodulin-Dependent Protein Kinase Type 2Disks Large Homolog 4 ProteinReceptors, AMPAReceptors, N-Methyl-D-Aspartatebiomolecular condensateliquid-liquid phase separationmolecular biophysicsmulti-phase condensatenonepostsynaptic densitystructural biology

Identifiers

PMID40985614
PMCPMC12456954

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.