Evidence map›Paper›PMID 40985299›Full record

ArticleChembiochem : a European journal of chemical biology2025

Aldehyde or Hydrate? Investigation into the Oxidation of 5-Formylcytosine Derivatives Using a Computational and Experimental Approach.

Kuangjie Liu, Annika Menke, Fabian L Zott, Domenic Mayer, Lena J Daumann, Hendrik Zipse

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Kuangjie LiuFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0009-0005-0663-8202
Annika MenkeFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0009-0003-8673-7002
Fabian L ZottFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0000-0002-4813-947X
Domenic MayerFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0009-0000-1118-7243
Lena J DaumannFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0000-0003-2197-136X
Hendrik ZipseFaculty of Chemistry and Pharmacy, Ludwig-Maximilians University Munich, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0000-0002-0534-3585

Funding

Deutsche Forschungsgemeinschaft PID 325871075
6 · The paper itself

Abstract

This study investigates the oxidation of 5-hydroxymethyl and 5-formyl nucleobases using an iron(IV)-oxido complex that mimics the function of TET enzymes. A central question in this context is whether the oxidation of formyl substrates proceeds via the aldehyde or the hydrate form. To investigate the possible different reaction kinetics of these two forms, nucleobases containing a 6-aza-moiety are employed, giving rise to significantly more aldehyde hydrate as compared to the unaltered nucleobase. The concentration changes of substrates and products during oxidation were followed with

Indexed as

AldehydesCytosineKineticsMolecular StructureOxidation-Reduction5-formylcytosineAldehydesCytosinealdehyde hydratesCH bond oxidationDNA methylationmodified nucleobasesten‐eleven‐translocation enzymes

Identifiers

PMID40985299
PMCPMC12596925

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.