Evidence map›Paper›PMID 40985210›Full record

ArticleJournal of chemical theory and computation2025

Development of Transferable Coarse-Grained Lipid Models with Optimized Structural and Elastic Membrane Properties.

Soumil Y Joshi, Teshani Kumarage, Rana Ashkar, Sanket A Deshmukh

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Soumil Y JoshiDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0003-1531-0098
Teshani KumarageDepartment of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States.
Rana AshkarDepartment of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0003-4075-2330
Sanket A DeshmukhDepartment of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States.ORCID 0000-0001-7573-0057

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lipid membranes play crucial roles in cellular functions and offer diverse engineering applications. Studying their properties is critical but computationally demanding through atomistic simulations. In this work, we develop coarse-grained (CG) models for phosphocholine lipids, aimed at balancing computational efficiency and predictive accuracy with chemical and temperature transferability. We introduce chargeless CG beads with 2:1 or 3:1 mapping and optimize the force fields through a combination of systematic and accelerated approaches that integrate particle swarm optimization algorithm with molecular dynamics simulations. The optimization utilizes structural and elastic membrane properties obtained experimentally through X-ray and neutron scattering studies including lipid packing density, membrane thickness, and bending modulus. Validation against atomistic simulations shows that our CG models accurately reproduce the structural features of lipids including bond and angle distributions, radial distribution functions, and key bilayer properties across various system sizes and simulation time steps. A unique feature of our CG models is the bead transferability across lipids of different chain structures as well as polymeric macromolecules with similar atomic grouping. This capability facilitates future studies of more complex systems including lipid mixtures, hybrid lipid-polymer membranes, and lipid-glycomaterial complexes─thus offering an efficient platform for predicting structural and functional dynamics while mitigating the computational challenges of atomistic simulations.

Identifiers

PMID40985210
PMCPMC12529907

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.