Evidence map›Paper›PMID 40983680›Full record

ArticleNature metabolism2025

The Neurolipid Atlas: a lipidomics resource for neurodegenerative diseases.

Femke M Feringa, Sascha J Koppes-den Hertog, Lian Y Wang, Rico J E Derks, Iris Kruijff, Lena Erlebach, Jorin Heijneman, Ricardo Miramontes, Nadine Pömpner, Niek Blomberg and 17 more

Abstract read
In one paragraph

Article in Nature metabolism, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Membrane Complexity and Phase Behavior Dictate the Stability of Membrane-Inserted AβChemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Special Issue "The Role of Lipids in Health and Diseases".International journal of molecular sciences · 2026
    Article
  11. bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Research Status and Latest Progress in the Regulatory Mechanisms of ABCA1.International journal of molecular sciences · 2025
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Femke M Feringa *Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Sascha J Koppes-den Hertog *Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-7372-8946
Lian Y WangLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands.ORCID http://orcid.org/0009-0006-0509-6680
Rico J E DerksLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-8920-7133
Iris KruijffCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Lena ErlebachGerman Center for Neurodegenerative Diseases (DZNE) Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-9077-8689
Jorin HeijnemanCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.
Ricardo MiramontesDepartment of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA.
Nadine PömpnerLeibniz Institute on Aging, Fritz Lipmann Institute, Jena, Germany.
Niek BlombergLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands.
Damien Olivier-JimenezLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-6363-0857
Lill Eva JohansenCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-2187-6709
Alexander J CammackDepartment of Neurodegenerative Disease, Queen Square Institute of Neurology, University College London, London, UK.
Ashling GiblinUK Dementia Research Institute, University College London, London, UK.
Christina E ToomeyDepartment of Neurodegenerative Disease, Queen Square Institute of Neurology, University College London, London, UK.ORCID http://orcid.org/0000-0002-5146-3326
Indigo V L RoseInstitute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0491-1269
Hebao YuanNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.
Michael E WardNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.
Adrian M IsaacsDepartment of Neurodegenerative Disease, Queen Square Institute of Neurology, University College London, London, UK.
Martin KampmannInstitute for Neurodegenerative Diseases, University of California, San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-3819-7019
Deborah Kronenberg-VersteegGerman Center for Neurodegenerative Diseases (DZNE) Tübingen, Tübingen, Germany.
Tammaryn LashleyDepartment of Neurodegenerative Disease, Queen Square Institute of Neurology, University College London, London, UK.
Leslie M ThompsonDepartment of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA.
Alessandro OriLeibniz Institute on Aging, Fritz Lipmann Institute, Jena, Germany.ORCID http://orcid.org/0000-0002-3046-0871
Yassene MohammedLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands.ORCID http://orcid.org/0000-0003-3265-3332
Martin GieraLeiden University Medical Center, Center for Proteomics and Metabolomics, Leiden, The Netherlands. m.a.giera@lumc.nl.ORCID http://orcid.org/0000-0003-1684-1894
Rik van der KantCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam Neuroscience, Amsterdam, The Netherlands. r.h.n.vander.kant@vu.nl.ORCID http://orcid.org/0000-0002-7023-0106

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Project 3: Neuropathology of the multi-proteinopathy of c9FTD/ALS.P01NS084974 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2014 to 2024
$17.6M
Investigating the Functional Impact of AD Risk Genes on Neuro-Vascular InteractionsU01AG072464 · NIA · REGENERATIVE RESEARCH FOUNDATION · PI HARARI, OSCAR, KAMPMANN, MARTIN · 2021 to 2025
$8.7M
Molecular Mechanisms of Pathogenesis in Huntington’s diseaseR35NS116872 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Leslie Michels Thompson · 2020 to 2026
$8.5M
Predoctoral Training in NeurobiologyT32NS115706 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SAMUEL JEREMY PLEASURE · 2020 to 2026
$3.4M
Systematic elucidation of endosomal trafficking as a therapeutic opportunity in AD using CRISPR-based functional genomicsR01AG062359 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAMPMANN, MARTIN · 2018 to 2022
$3.2M
Alzheimer Nederland (Alzheimer Netherlands) WE-03-2017-09PAlzheimer Nederland (Alzheimer Netherlands) WE.03-2019-13Alzheimer Nederland (Alzheimer Netherlands) WE.15-2019-16Alzheimer's Association 2019-AARG-643165Alzheimer's Association ADSF-21-816750Alzheimer's Association ADSF-21-831212-CCalifornia Institute for Regenerative Medicine (CIRM) EDUC412812Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) P01 NS084974-06A1Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) T32NS115706NCI NIH HHS P30 CA062203Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) 09150172110086NIA NIH HHS R01 AG062359NIA NIH HHS U01 AG072464NINDS NIH HHS P01 NS084974NINDS NIH HHS R35 NS116872NINDS NIH HHS T32 NS115706ZonMw (Netherlands Organisation for Health Research and Development) 435005033ZonMw (Netherlands Organisation for Health Research and Development) 733050515
6 · The paper itself

Abstract

Lipid alterations in the brain have been implicated in many neurodegenerative diseases. To facilitate comparative lipidomic research across brain diseases, we establish a data common named the Neurolipid Atlas that we prepopulated with isogenic induced pluripotent stem cell (iPS cell)-derived lipidomics data for different brain diseases. Additionally, the resource contains lipidomics data of human and mouse brain tissue. Leveraging multiple datasets, we demonstrate that iPS cell-derived neurons, microglia and astrocytes exhibit distinct lipid profiles that recapitulate in vivo lipotypes. Notably, the Alzheimer disease (AD) risk gene ApoE4 drives cholesterol ester (CE) accumulation specifically in human astrocytes and we also observe CE accumulation in whole-brain lipidomics from persons with AD. Multiomics interrogation of iPS cell-derived astrocytes revealed that altered cholesterol metabolism has a major role in astrocyte immune pathways such as the immunoproteasome and major histocompatibility complex class I antigen presentation. Our data commons, available online ( https://neurolipidatlas.com/ ), allows for data deposition by the community and provides a user-friendly tool and knowledge base for a better understanding of lipid dyshomeostasis in neurodegenerative diseases.

Indexed as

LipidomicsNeurodegenerative DiseasesAlzheimer DiseaseAnimalsAstrocytesBrainHumansInduced Pluripotent Stem CellsLipid MetabolismMiceMicrogliaNeurons

Identifiers

PMID40983680
PMCPMC12552125

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.