Evidence map›Paper›PMID 40973818›Full record

ArticleNature metabolism2025

Mapping the plasma metabolome to human health and disease in 274,241 adults.

Jia You, Xi-Han Cui, Yi-Lin Chen, Yi-Xuan Wang, Hai-Yun Li, Yi-Xuan Qiang, Ji-Yun Cheng, Yue-Ting Deng, Yu Guo, Peng Ren and 10 more

Abstract read
In one paragraph

Article in Nature metabolism, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  10. LOESS and DE-SWAN can induce artifactual "waves" of molecular aging.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Jia You *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-7079-8041
Xi-Han Cui *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yi-Lin Chen *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yi-Xuan Wang *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Hai-Yun Li *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yi-Xuan Qiang *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Ji-Yun Cheng *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yue-Ting Deng *Department of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-9962-7860
Yu GuoDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.ORCID http://orcid.org/0009-0002-1747-4440
Peng RenDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yi ZhangDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yu HeDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Xiao-Yu HeDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Shi-Dong ChenDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Ya-Ru ZhangDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Yu-Yuan HuangDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China.
Ying MaoDepartment of Neurosurgery, Huashan Hospital Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0001-8055-115X
Jian-Feng FengDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China. jianfeng64@gmail.com.ORCID http://orcid.org/0000-0001-5987-2258
Wei ChengDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China. wcheng.fdu@gmail.com.ORCID http://orcid.org/0000-0003-1118-1743
Jin-Tai YuDepartment of Neurology and National Center for Neurological Disorders, Huashan Hospital, Institute of Science and Technology for Brain-Inspired Intelligence, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Academy of Natural Sciences (SANS), Shanghai Medical College, Fudan University, Shanghai, China. jintai_yu@fudan.edu.cn.ORCID http://orcid.org/0000-0002-2532-383X

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82071201National Natural Science Foundation of China (National Science Foundation of China) 82071997, 82472055National Natural Science Foundation of China (National Science Foundation of China) 82271471National Natural Science Foundation of China (National Science Foundation of China) 82402381, 82471940National Natural Science Foundation of China (National Science Foundation of China) 92249305Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 2023SHZDZX02
6 · The paper itself

Abstract

A systematic characterization of metabolic profiles in human health and disease enhances precision medicine. Here we present a comprehensive human metabolome-phenome atlas, using data from 274,241 UK Biobank participants with nuclear magnetic resonance metabolic measures. This atlas links 313 plasma metabolites to 1,386 diseases and 3,142 traits, with participants being prospectively followed for a median of 14.9 years. This atlas uncovered 52,836 metabolite-disease and 73,639 metabolite-trait associations, where the ratio of cholesterol to total lipids in large low-density lipoprotein percentage was found as the metabolite associated with the highest number (n = 526) of diseases. In addition, we found that more than half (57.5%) of metabolites showed statistical variations from healthy individuals over a decade before disease onset. Combined with demographics, the machine-learning-based metabolic risk score signified the top 30 (around 10%) metabolites as biomarkers, yielding favourable classification performance (area under the curve > 0.8) for 94 prevalent and 81 incident diseases. Finally, Mendelian randomization analyses provided support for causal relationships of 454 metabolite-disease pairs, among which 402 exhibited shared genetic determinants. Additional insights can be gleaned via an accessible interactive resource ( https://metabolome-phenome-atlas.com/ ).

Indexed as

DiseaseMetabolomeAdultBiomarkersFemaleHumansMaleMendelian Randomization AnalysisMetabolomicsMiddle AgedBiomarkers

Identifiers

PMID40973818
PMCPMC12638258

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.