Evidence map›Paper›PMID 40973454›Full record

ArticleNucleic acids research2025

Post-transcriptional control of KRAS: functional roles of 5'UTR RNA G-quadruplexes, long noncoding RNA, and hnRNPA1.

Ylenia Cortolezzis, Zahraa Othman, Francesca Agostini, Iman Ibrahim, Raffaella Picco, Gilmar F Salgado, Eros Di Giorgio, Luigi E Xodo

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ylenia CortolezzisDepartment of Medicine, Laboratory of Biochemistry, University of Udine, 33100 Udine, Italy.
Zahraa OthmanARNA Laboratory, Université de Bordeaux, Inserm U1212, CNRS UMR 5320, IECB, 33607 Pessac, France.
Francesca AgostiniDepartment of Medicine, Laboratory of Biochemistry, University of Udine, 33100 Udine, Italy.
Iman IbrahimARNA Laboratory, Université de Bordeaux, Inserm U1212, CNRS UMR 5320, IECB, 33607 Pessac, France.
Raffaella PiccoDepartment of Medicine, Laboratory of Biochemistry, University of Udine, 33100 Udine, Italy.
Gilmar F SalgadoARNA Laboratory, Université de Bordeaux, Inserm U1212, CNRS UMR 5320, IECB, 33607 Pessac, France.
Eros Di GiorgioDepartment of Medicine, Laboratory of Biochemistry, University of Udine, 33100 Udine, Italy.ORCID 0000-0003-0202-2222
Luigi E XodoDepartment of Medicine, Laboratory of Biochemistry, University of Udine, 33100 Udine, Italy.ORCID 0000-0003-3344-7207

Funding

Associazione Italiana per la Ricerca sul Cancro 19898Associazione Italiana per la Ricerca sul Cancro IG 2017Italian Ministry of EducationMinistère de l'Europe et des Affaires ÉtrangèresSD-Cancer Contributions of physics, chemistry and engineering sciences to oncology
6 · The paper itself

Abstract

Previous studies have shown that human KRAS expression is regulated at the transcriptional level by G-quadruplex DNA structures within its promoter. Here we show an additional level of regulation involving a post-transcriptional mechanism centred on the 5'-untranslated region (5'UTR) of the messenger RNA (mRNA) characterized by G4 structures (rG4s). Long noncoding RNAs (lncRNAs) and the protein hnRNPA1 are also involved in this mechanism. RIP-seq confirmed the presence of rG4s in the 5'UTR. Deletion of the rG4 region using CRISPR/Cas9 resulted in a significant increase in KRAS mRNA levels, indicating the role of the 5'UTR in controlling mRNA levels. RIP shows that hnRNPA1 is recruited to the 5'UTR, where it unfolds the rG4 structures and potentially affects mRNA stability. In addition, lncRNAs transcribed from the LINC01750 locus can hybridize to the rG4 region of 5'UTR and form RNA duplexes leading to RNase III-assisted degradation of the targeted mRNA. Activation of the LINC01750 locus with dCas9-VP64 resulted in downregulation of KRAS mRNA, whereas its suppression with dCas9-KRAB led to upregulation of both KRAS mRNA and protein. Since lncRNA-mediated regulation of mRNA appears to be a crucial aspect of cellular homeostasis and its disruption contributes to various diseases, understanding these mechanisms may reveal promising new therapeutic targets.

Indexed as

5' Untranslated RegionsG-QuadruplexesHeterogeneous Nuclear Ribonucleoprotein A1Proto-Oncogene Proteins p21(ras)RNA, Long NoncodingRNA Processing, Post-TranscriptionalCell Line, TumorCRISPR-Cas SystemsGene Expression Regulation, NeoplasticHumansRNA, MessengerRNA Stability5' Untranslated RegionsHeterogeneous Nuclear Ribonucleoprotein A1hnRNPA1 protein, humanKRAS protein, humanProto-Oncogene Proteins p21(ras)RNA, Long NoncodingRNA, Messenger

Identifiers

PMID40973454
PMCPMC12449053

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.