Evidence map›Paper›PMID 40973439›Full record

ArticleThe Plant cell2025

Natural variation in the ZmPIMT1 promoter enhances seed aging tolerance by regulating PABP2 repair in maize.

Yumin Zhang, Lynnette M A Dirk, Jingliang Zheng, Jiahao Chai, Xianbo Song, Jie Cao, Hao Wang, Yan Liu, Yunjun Liu, Sihan Zhen and 6 more

Abstract read
In one paragraph

Article in The Plant cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yumin ZhangState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0000-0001-5437-5973
Lynnette M A DirkDepartment of Horticulture, Seed Biology, Martin-Gatton College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY 40546, USA.ORCID 0000-0002-7564-5095
Jingliang ZhengState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0009-0007-1634-9150
Jiahao ChaiState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0009-0003-6190-9015
Xianbo SongState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0009-0003-6981-7238
Jie CaoState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0009-0006-8877-3762
Hao WangState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0009-0004-8987-988X
Yan LiuChinese Academy of Agricultural Sciences, Institute of Crop Science, Beijing 100081, China.ORCID 0009-0002-0798-5167
Yunjun LiuChinese Academy of Agricultural Sciences, Institute of Crop Science, Beijing 100081, China.ORCID 0000-0002-1861-9624
Sihan ZhenChinese Academy of Agricultural Sciences, Institute of Crop Science, Beijing 100081, China.ORCID 0000-0003-4770-7372
Junjie FuChinese Academy of Agricultural Sciences, Institute of Crop Science, Beijing 100081, China.ORCID 0000-0002-4702-2392
Guoji WangResearch Center, Gansu Wugu Seed Co., Ltd, Lanzhou, Gansu province 730070, China.ORCID 0009-0000-2472-0772
Shixiao LiResearch Center, Gansu Wugu Seed Co., Ltd, Lanzhou, Gansu province 730070, China.ORCID 0009-0005-0772-5607
Arthur G HuntDepartment of Plant and Soil Sciences, Martin-Gatton College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY 40546, USA.ORCID 0000-0002-0008-4158
A Bruce DownieDepartment of Horticulture, Seed Biology, Martin-Gatton College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY 40546, USA.ORCID 0000-0001-6680-0551
Tianyong ZhaoState Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.ORCID 0000-0002-1278-2842

Funding

Agricultural Key-scientific 2023NYGG001Chinese Universities Scientific Fund 2452023069National Natural Science Foundation of China 32101693
6 · The paper itself

Abstract

PROTEIN L-ISOASPARTYL O-METHYLTRANSFERASE (PIMT) promotes seed vigor by repairing damaged proteins. However, whether PIMT variants have arisen during maize (Zea mays) domestication remains unknown. Here, we found 2 variants in the ZmPIMT1 promoter. The ZmPIMT1  Hap C7-2 promoter exhibited stronger activity than the ZmPIMT1  Hap Z58 promoter. Maize inbred lines carrying the ZmPIMT1  Hap C7-2 promoter had greater seed vigor than ZmPIMT1  Hap Z58 lines in a population of Zhengdan 958 recombinant inbred lines (RILs) and a maize inbred population. By characterizing the maize zmpimt1 knockdown mutant, ZmPIMT1-overexpressing maize and Arabidopsis thaliana heterologous ZmPIMT1 overexpression lines, we demonstrated that ZmPIMT1 positively regulates seed vigor. Co-IP and LC-MS/MS assays showed that ZmPIMT1 interacts with and repairs damaged POLY(A) BINDING PROTEIN2 (PABP2). ZmPIMT1 stabilizes PABP2 RNA-binding activity and regulates the stability and translation efficiency of the mRNA during maize seed germination. Disruption of PABP2 decreases seed vigor in Arabidopsis thaliana. Furthermore, the F-statistics (Fixation index; FST) and nucleotide diversity (θπ) ratio between teosinte and maize lines showed that ZmPIMT1 likely has not undergone selection during maize domestication. Our findings unveil a molecular mechanism in which ZmPIMT1 regulates seed vigor in maize and highlight a potential application of the advantageous ZmPIMT1 haplotype for breeding new varieties with increased seed vigor.

Indexed as

Plant ProteinsPromoter Regions, GeneticProtein D-Aspartate-L-Isoaspartate MethyltransferaseSeedsZea maysArabidopsisGene Expression Regulation, PlantGenetic VariationPlants, Genetically ModifiedPlant ProteinsProtein D-Aspartate-L-Isoaspartate Methyltransferase

Identifiers

PMID40973439
PMCPMC12510314

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.