Evidence map›Paper›PMID 40971948›Full record

ArticlePLoS computational biology2025

Modeling neuron-astrocyte interactions in neural networks using distributed simulation.

Han-Jia Jiang, Jugoslava Aćimović, Tiina Manninen, Iiro Ahokainen, Jonas Stapmanns, Mikko Lehtimäki, Markus Diesmann, Sacha J van Albada, Hans Ekkehard Plesser, Marja-Leena Linne

Abstract read
In one paragraph

Article in PLoS computational biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. WhenAPL bioengineering · 2025
    Review
  3. Article
  4. CaFrontiers in cellular neuroscience · 2025
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Han-Jia JiangInstitute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany.ORCID 0000-0002-9633-2573
Jugoslava AćimovićFaculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Tiina ManninenFaculty of Medicine and Health Technology, Tampere University, Tampere, Finland.ORCID 0000-0002-0456-1185
Iiro AhokainenFaculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Jonas StapmannsInstitute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany.
Mikko LehtimäkiFaculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Markus DiesmannInstitute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany.ORCID 0000-0002-2308-5727
Sacha J van AlbadaInstitute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany.ORCID 0000-0003-0682-4855
Hans Ekkehard PlesserInstitute for Advanced Simulation (IAS-6), Jülich Research Centre, Jülich, Germany.ORCID 0000-0001-7843-5993
Marja-Leena LinneFaculty of Medicine and Health Technology, Tampere University, Tampere, Finland.ORCID 0000-0003-2577-7329

Funding

Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)European Union’s Horizon 2020 Framework Programme for Research and Innovation
6 · The paper itself

Abstract

Astrocytes engage in local interactions with neurons, synapses, other glial cell types, and the vasculature through intricate cellular and molecular processes, playing an important role in brain information processing, plasticity, cognition, and behavior. This study advances understanding of local interactions and self-organization of neuron-astrocyte networks and contributes to the broader investigation of their potential relationship with global activity regimes and overall brain function. We present six new contributions: (1) the development of a new model-building framework for neuron-astrocyte networks, (2) the introduction of connectivity concepts for tripartite neuron-astrocyte interactions in biological neural networks, (3) the design of a scalable architecture capable of simulating networks with up to a million cells, (4) a formalized description of neuron-astrocyte modeling that facilitates reproducibility, (5) the integration of experimental data to a greater extent than existing studies, and (6) simulation results demonstrating how neuron-astrocyte interactions drive the emergence of synchronization in local neuronal groups. Specifically, we develop a new technology for representing astrocytes and their interactions with neurons in distributed simulation code for large-scale spiking neuronal networks. This includes an astrocyte model with calcium dynamics, an extended neuron model receiving calcium-dependent signals from astrocytes, and a parallelized connectivity generation scheme for tripartite interactions between pre- and postsynaptic neurons and astrocytes. We verify the efficiency of our reference implementation through benchmarks varying in computing resources and network sizes. Our in silico experiments reproduce experimental data on astrocytic effects on neuronal synchronization, demonstrating that astrocytes consistently induce local synchronization in groups of neurons across various connectivity schemes and global activity regimes. By adjusting the strength of neuron-astrocyte interactions, we can switch the global activity regime from asynchronous to network-wide synchronization. This work represents an advancement in neuron-astrocyte modeling, introducing a novel framework that enables large-scale simulations of astrocytic influence on neuronal networks.

Indexed as

AstrocytesModels, NeurologicalNerve NetNeuronsAnimalsCell CommunicationComputational BiologyComputer SimulationHumansNeural Networks, Computer

Identifiers

PMID40971948
PMCPMC12494295

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.