Evidence map›Paper›PMID 40971094›Full record

ArticleMolecular biomedicine2025

Single-cell RNA sequencing identifies CD8Teff cell activation as a predictive biomarker in triple-negative breast cancer immunotherapy.

Luhui Mao, Zebang Zhang, Yongjian Chen, Qing Peng, Zhenjun Huang, Wenhao Ouyang, Dongqiang Zeng, Wei Ren, Zifan He, Tang Li and 6 more

Abstract read
In one paragraph

Article in Molecular biomedicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Luhui Mao *Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Zebang Zhang *Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Yongjian Chen *Dermatology and Venereology Division, Department of Medicine Solna, Center for Molecular Medicine, Karolinska Institute, Stockholm, Sweden.
Qing Peng *Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Zhenjun Huang *Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Wenhao OuyangGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Dongqiang ZengDepartment of Oncology, Nanfang Hospital, Southern Medical University, Guangzhou, Guangdong, People's Republic of China.
Wei RenGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Zifan HeGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Tang LiGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China.
Zehua WangFaculty of Innovation Engineering, Institute for AI in Medicine and Faculty of Medicine, Macau University of Science and Technology, Taipa, Macao, China.
Ruichong LinFaculty of Innovation Engineering, Institute for AI in Medicine and Faculty of Medicine, Macau University of Science and Technology, Taipa, Macao, China.
Jianli ZhaoGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China. zhaojli5@mail.sysu.edu.cn.
Jiannan WuGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China. king8702@163.com.
Herui YaoGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China. yaoherui@mail.sysu.edu.cn.
Yunfang YuGuangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Guangdong-Hong Kong Joint Laboratory for RNA Medicine, Department of Medical Oncology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University, Guangzhou, China. yuyf9@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0003-2579-6220

Funding

GuangDong Basic and Applied Basic Research Foundation 2025A1515011563Guangdong Provincial Clinical Research Center for Breast Diseases. 2023B110005Guangdong Provincial Key Laboratory of Optical Fiber Sensing and Communications 516621Guangdong Science and Technology Department 2024B1212030002Innovation and Technology Commission - Hong Kong MHP/002/22Innovative Research Group Project of the National Natural Science Foundation of China 82273204Innovative Research Group Project of the National Natural Science Foundation of China 82404087Key Technologies Research and Development Program 2023YFE0204000Science and Technology Planning Project of Guangdong Province 2023B1212060013Sun Yat-Sen Clinical Research Cultivating Program SYSQH-II-2024-07
6 · The paper itself

Abstract

Immunotherapy has emerged as a promising treatment option for triple-negative breast cancer (TNBC); however, the pronounced heterogeneity of the tumor immune microenvironment significantly hinders the prediction of therapeutic efficacy, with effective biomarkers also remaining limited. This study utilizes single-cell RNA sequencing (scRNA-seq) and transcriptome analysis to dissect the immune landscapes of TNBC, emphasizing CD8 effector T cells (CD8Teff) as potential predictors of immune checkpoint inhibitors (ICIs) treatment response. Immune profiling revealed that CD8Teff cells were predominantly enriched in "hot" tumors strongly correlating with improved progression-free and overall survival. Notably, the cytokine C-X-C Motif Chemokine Ligand 13 (CXCL13) emerged as a key regulator, with its high expression marking an immune-active tumor microenvironment favorable to ICI efficacy. Comprehensive analysis uncovered critical interactions between CD8Teff cells and other immune and stromal components, supporting the formation of an immunologically active tumor microenvironment (TME) conducive to tumor control. Additionally, metabolic reprogramming of CD8Teff cells in responsive tumors highlighted pathways that may influence ICIs efficacy. CD8Teff cells significantly influence the TME and predict ICI success in TNBC, with CXCL13 as a pivotal modulator. A pathology-based artificial intelligence model for CD8Teff recognition was developed, achieving an area under the curve (AUC) of 0.823 in the training cohort and 0.805 in the validation cohort. This study provides an in-depth characterization of the TNBC immune microenvironment, identifying CD8Teff functionality, CXCL13 signaling, and immune-metabolic pathways as critical determinants of immunotherapy success. These findings support the development of personalized treatment strategies based on immune profiling to enhance therapeutic efficacy in TNBC.

Indexed as

Biomarkers, TumorCD8-Positive T-LymphocytesImmunotherapySequence Analysis, RNASingle-Cell AnalysisTriple Negative Breast NeoplasmsChemokine CXCL13FemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansImmune Checkpoint InhibitorsTumor MicroenvironmentBiomarkers, TumorChemokine CXCL13Immune Checkpoint InhibitorsArtificial intelligenceCD8Teff cellsC-X-C Motif Chemokine Ligand 13Immunotherapy responseSingle-cell RNA sequencingTriple-negative breast cancer

Identifiers

PMID40971094
PMCPMC12449285

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.