Evidence map›Paper›PMID 40966524›Full record

ArticleNucleic acids research2025

The nuclear pore complex acts as a hub for pri-miRNA transcription and processing in plants.

Lucia Gonzalo, Delfina Gagliardi, Camila Zlauvinen, Tomasz Gulanicz, Agustín L Arce, Josefina Fernandez, Damian A Cambiagno, Catharina Merchante, Agnieszka Zienkiewicz, Artur Jarmolowski and 1 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lucia GonzaloInstituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Delfina GagliardiInstituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Camila ZlauvinenInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM "La Mayora"), Universidad de Málaga-Consejo Superior de Investigaciones Cientificas (UMA-CSIC), 29010, Málaga, Spain.
Tomasz GulaniczCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, 87-100, Toruń, Poland.
Agustín L ArceInstituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Josefina FernandezInstituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Damian A CambiagnoInstituto de Agrobiotecnología del Litoral, CONICET, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Catharina MerchanteInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM "La Mayora"), Universidad de Málaga-Consejo Superior de Investigaciones Cientificas (UMA-CSIC), 29010, Málaga, Spain.
Agnieszka ZienkiewiczCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, 87-100, Toruń, Poland.ORCID 0000-0003-0799-0521
Artur JarmolowskiCátedra de Bioinformática, Facultad de Bioquímica y Ciencias Biológicas, Universidad Nacional del Litoral, 3000, Santa Fe, Argentina.
Pablo A ManavellaInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM "La Mayora"), Universidad de Málaga-Consejo Superior de Investigaciones Cientificas (UMA-CSIC), 29010, Málaga, Spain.ORCID 0000-0003-3589-4414

Funding

Agencia Nacional de Promoción Científica y Tecnológica PICT-2020-00757Agencia Nacional de Promoción Científica y Tecnológica PICT-2021-I-A-00452Spanish Ministry of Science and Innovation CNS2023-145312Spanish Ministry of Science and Innovation PID2022-137037NB-I00Universidad Nacional del Litoral CAI + D 2020
6 · The paper itself

Abstract

The regulation of miRNA biogenesis and movement is essential for plant development and environmental responses. HASTY (HST), a karyopherin protein, has been implicated in miRNA biogenesis and movement, though its role in non-cell-autonomous miRNA movement remains unclear. Through a genetic screen, we identified that mutations in the HAWAIIAN SKIRT (HWS) gene suppress the developmental defects of hst mutants by restoring miRNA movement. Our findings show that HWS interacts with nuclear transport factors and nuclear pore complex (NPC) components, including NUP1, positioning HWS as a regulator of miRNA nuclear export. Using microscopy and fluorescence in situ hybridization, we showed that pri-miRNA transcription, and likely their co-transcriptional processing, occur at the nuclear pore. Notably, we uncovered an antagonistic relationship between HST and HWS in regulating MIRNA transcription at the NPC and AGO1 loading, which could explain the observed changes in miRNA movement. HST promotes the association of MIRNA loci with the NPC, spatially positioning co-transcriptional processing by the NPC. Conversely, HWS negatively regulates this process by degrading MEDIATOR 37 subunits and detaching the processing complex from the NPC. Our data provide evidence of spatial coordination of miRNA transcription, biogenesis, and movement, highlighting a novel role for the NPC in the miRNA pathway.

Indexed as

ArabidopsisArabidopsis ProteinsMicroRNAsNuclear PoreRNA Processing, Post-TranscriptionalTranscription, GeneticActive Transport, Cell NucleusArgonaute ProteinsGene Expression Regulation, PlantKaryopherinsMutationNuclear Pore Complex ProteinsAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsKaryopherinsMicroRNAsNuclear Pore Complex Proteins

Identifiers

PMID40966524
PMCPMC12448844

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.