Evidence map›Paper›PMID 40964366›Full record

ArticlebioRxiv : the preprint server for biology2025

Expanding the chemical exposome using in-silico transformation analysis - an example using insecticides.

Mannivannan Jothiramajayam, Dinesh Barupal

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mannivannan JothiramajayamIntegrated Data Science Laboratory for Metabolomics and Exposomics, Department of Environmental Medicine, Icahn School of Medicine at Mount Sinai, New York, USA.
Dinesh BarupalIntegrated Data Science Laboratory for Metabolomics and Exposomics, Department of Environmental Medicine, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID 0000-0002-9954-8628

Funding

Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
The Mount Sinai Transdisciplinary Center on Early Environmental ExposuresP30ES023515 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Chris Gennings · 2014 to 2026
$21.3M
Exposome Correlation and Interpretation Database (ECID)U24ES035386 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Dinesh Barupal, SUSAN L TEITELBAUM · 2023 to 2026
$3.3M
Perfluoroalkyl substances and incident type 2 diabetes in a US population: A metabolome-genome investigationR01ES033688 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Damaskini Valvi · 2022 to 2026
$3.2M
Mapping the blood cancer exposome for environmental risk profiles of mature B-cell neoplasmsR01ES032831 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Douglas Ian Walker · 2022 to 2026
$2.3M
Metal Mixtures, MicroRNAs and Metabolomics in Extracellular Vesicles, and Early-life Programming of Childhood Sleep Patterns: A Longitudinal StudyR01ES035478 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Dinesh Barupal, Allison Kupsco · 2024 to 2026
$2.1M
GeoSpace - GeoSpatial Knowledgebase for ExposomicsR24ES036917 · NIEHS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Dinesh Barupal, Itai Kloog · 2025 to 2026
$1.1M
NCATS NIH HHS UL1 TR004419NIEHS NIH HHS P30 ES023515NIEHS NIH HHS R01 ES032831NIEHS NIH HHS R01 ES033688NIEHS NIH HHS R01 ES035478NIEHS NIH HHS R24 ES036917NIEHS NIH HHS U24 ES035386
6 · The paper itself

Abstract

The exposome encompasses a vast chemical space that can originate from the consumer industry and environmental sources. Once these chemicals enter into cells (human or other organisms), they can be also transformed into products that differ in terms of toxicity and health effects. Recent developments in machine learning methods and chemical data science resources have enabled the in-silico prediction of transformation reactions. Here, we report an integrated workflow of these existing resources (RXNMmapper, Rxn-INSIGHT and RDChiral) to predict the transformation product for any chemical in the exposome. We have generated a large library of reaction templates from > 90,000 reactions sourced from the PubChem database. Utility of the reaction screening and transformation prediction workflow has been demonstrated for insecticides structures (n=181), yielding 21,284 unique transformation products. Many of these products have PubChem entries but have not yet been linked with the parent compounds. By identifying a multitude of plausible new products, this approach may expand our understanding of the metabolism of chemical exposure, guide future biomonitoring research and characterize of the human exposome in the existing datasets and chemical databases.

Indexed as

Computational ChemistryExposomeInsecticidesIn-silico metabolismISTAMetabolomicsRDChiralreaction databasesRxn-INSIGHTRXNMapper

Identifiers

PMID40964366
PMCPMC12439867

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.