Evidence map›Paper›PMID 40964325›Full record

ArticlebioRxiv : the preprint server for biology2025

Human-specific features of the cerebellum and ZP2-regulated synapse development.

Suel-Kee Kim, Adriana Cherskov, Aastha Sindhwani, Sang-Hun Choi, Hyojin Kim, Ming-Li Li, Menglei Zhang, Xoel Mato-Blanco, Yuting Liu, Nicola Micali and 37 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors.

Suel-Kee KimDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-0240-9304
Adriana CherskovDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9905-2665
Aastha SindhwaniDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6719-8443
Sang-Hun ChoiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9092-675X
Hyojin KimDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-6636-5745
Ming-Li LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Menglei ZhangDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0007-0418-7377
Xoel Mato-BlancoHospital del Mar Research Institute, Parc de Biomèdica de Barcelona (PRBB), 08003 Barcelona, Catalonia, Spain.ORCID 0000-0003-2155-9922
Yuting LiuDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Nicola MicaliDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0002-2936-4708
David M YoungDepartment of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.
Mark EstacionDepartment of Neurology and Center for Neuroscience and Regeneration Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-7271-1165
Yueqi ZhangDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
José Manuel Ruiz-JiménezHospital del Mar Research Institute, Parc de Biomèdica de Barcelona (PRBB), 08003 Barcelona, Catalonia, Spain.
Anandita NadkarniDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0002-1490-584X
Victor LuriaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-0558-0983
Suvimal Kumar SindhuDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-7461-3104
Ipsita ChatterjeeDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9271-1277
Akemi ShibataDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0006-6761-691X
Dan LiangDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Hyesun ChoDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-1254-768X
Saejeong ParkDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-0926-8076
Ana SpajicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-4254-1089
Rothem KovnerDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3874-8888
Martina GlavanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6710-905X
Rachel J ChenWaisman Center, University of Wisconsin-Madison, Madison, WI, USA.
Ryan D RisgaardWaisman Center, University of Wisconsin-Madison, Madison, WI, USA.
Xinyun LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Sirisha PochareddyDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Amir KargerIT-Research Computing, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-4561-3850
Anita HuttnerDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.
Yury M MorozovDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3679-6819
Etienne W DaadiSouthwest National Primate Research Center, Texas Biomedical Research Institute, Departments of Cell Systems and Anatomy, and Radiology, Long School of Medicine, University of Texas Health at San Antonio, San Antonio, TX, USA.
Carlo ColantuoniDepartments of Neurology and of Neuroscience, Johns Hopkins School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-6818-6380
Kevin T GobeskeDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-2850-9197
John J ElyMAEBIOS Epidemiology Unit, Alamogordo, NM, USA.
Patrick R HofNash Family Department of Neuroscience, Friedman Brain Institute and Center for Discovery and Innovation, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-3208-1154
Marcel M DaadiSouthwest National Primate Research Center, Texas Biomedical Research Institute, Departments of Cell Systems and Anatomy, and Radiology, Long School of Medicine, University of Texas Health at San Antonio, San Antonio, TX, USA.ORCID 0000-0002-0243-8909
Chet C SherwoodDepartment of Anthropology and Center for the Advanced Study of Human Paleobiology, The George Washington University, Washington, DC, USA.ORCID 0000-0001-6711-449X
Alvaro DuqueDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-5086-5438
Shaojie MaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-8782-3047
Andre M M SousaWaisman Center, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0003-1740-5066
Stephen G WaxmanDepartment of Neurology and Center for Neuroscience and Regeneration Research, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-5718-7177
Pasko RakicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-6963-0508
Gabriel SantpereHospital del Mar Research Institute, Parc de Biomèdica de Barcelona (PRBB), 08003 Barcelona, Catalonia, Spain.ORCID 0000-0001-5909-8637
Stephan J SandersDepartment of Psychiatry and Behavioral Sciences, UCSF Weill Institute for Neurosciences, University of California, San Francisco, CA, USA.ORCID 0000-0001-9112-5148
Nenad SestanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-0966-9619

Funding

WNPRC Supplemental Request for Nonhuman Primate Enclosures to Equip HIV/AIDS-Related Research FacilitiesP51OD011106 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Dorota A. Grejner-Brzezinska · 2012 to 2026
$150.7M
A Multidisciplinary Center for Developing Human and Non-human Primate Brain Cell AtlasesUM1MH130991 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Hao Huang, ARNOLD KRIEGSTEIN · 2022 to 2026
$25.2M
Multispecies NHP dGTEx Research CenterU24HG012483 · NHGRI · OREGON HEALTH & SCIENCE UNIVERSITY · PI KRISTIN ARDLIE, DONALD F. CONRAD · 2022 to 2026
$17.0M
Supplement to TR01 Human cortical development and neural plasticity altered by trisomy 21R01HD106197 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI BHATTACHARYYA, ANITA, ZHANG, SU-CHUN · 2021 to 2025
$11.4M
M-SCORCH: Methamphetamine use disorder data generation center for Single Cell Opioid Responses in the Context of HIVU01DA053628 · NIDA · YALE UNIVERSITY · PI HO, YA-CHI, SESTAN, NENAD · 2021 to 2025
$9.5M
Laboratory, Data Analysis, and Coordinating Center (LDACC) for the Developmental Human Genotype-Tissue Expression ProjectU24HG012108 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, HUTTNER, ANITA JULIANE · 2021 to 2025
$8.7M
Origin of Cortical Species-specific Distinctions.R01DA023999 · NIDA · YALE UNIVERSITY · PI RAKIC, PASKO · 2008 to 2019
$7.9M
1/2 Cell Type and Region-Specific Regulatory Networks in Human Brain Development and DisordersU01MH116488 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2018 to 2022
$6.5M
Integrated Training For Physician-ScientistsT32GM140935 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher, Jeniel E Nett · 2021 to 2026
$6.5M
Origin of Cortical Species-specific DistinctionsR37DA023999 · NIDA · YALE UNIVERSITY · PI PASKO RAKIC · 2020 to 2026
$5.6M
Alzheimer's Disease Pathology in a Primate ModelR01AG067419 · NIA · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HOPKINS, WILLIAM D · 2021 to 2025
$3.8M
Comparative Epigenomics of Primate BrainsR01HG011641 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI KONOPKA, GENEVIEVE, SHERWOOD, CHESTER · 2021 to 2024
$2.4M
NHGRI NIH HHS R01 HG010898NHGRI NIH HHS R01 HG011641NHGRI NIH HHS U24 HG012108NHGRI NIH HHS U24 HG012483NIA NIH HHS R01 AG067419NICHD NIH HHS R01 HD106197NIDA NIH HHS R01 DA023999NIDA NIH HHS R37 DA023999NIDA NIH HHS U01 DA053628NIGMS NIH HHS T32 GM140935NIH HHS P51 OD011106NIMH NIH HHS F30 MH123074NIMH NIH HHS U01 MH116488NIMH NIH HHS UM1 MH130991NINDS NIH HHS R24 NS092988RRD VA I50 RX002999
6 · The paper itself

Abstract

Understanding the unique features of the human brain compared to non-human primates has long intrigued humankind. The cerebellum refines motor coordination and cognitive functions, contributing to the evolutionary development of human adaptability and dexterity. To identify shared and divergent features across primates, we conducted single-nucleus transcriptomic and chromatin accessibility profiling of the adult cerebellar cortex in humans, chimpanzees, macaques, and marmosets. We revealed human-specific transcriptomic and regulatory features, particularly those involved in synaptogenesis. Notably, we identified an enrichment of the sperm receptor zona pellucida glycoprotein 2 (ZP2) and its potential interactors, known for their roles in gamete interaction, in human granule cells. Experimental data show that ZP2 expression in human granule cells is induced by pontine mossy fibers, reducing synaptic proteins at pontocerebellar glomerular synapses, and decreasing cerebellar neuron electrophysiological activity. This unexpected co-option of ZP2 in human-specific synapse regulation provides insights into the evolutionary specialization of the human cerebellum.

Indexed as

Brain evolutionCerebellumHuman-specificMultiomicsSynapse developmentZP2

Identifiers

PMID40964325
PMCPMC12439918

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.