Evidence map›Paper›PMID 40964039›Full record

ArticleResearch square2025

Vaginal Microbiome Composition, Diversity and Dysbiosis: The ORCHiD Study.

April Deveaux, Oyomoare Osazuwa-Peters, Yeon Ji Kim, Pixu Shi, Drew Neish, Ashwini Joshi, Veronica Duck, Ashliegh Williams, Margaret Gates Kuliszewski, Bin Huang and 6 more

Abstract readPreprint
In one paragraph

Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

April DeveauxDuke University School of Medicine.ORCID 0000-0002-1185-7750
Oyomoare Osazuwa-PetersDuke University School of Medicine.
Yeon Ji KimDuke University.ORCID 0000-0002-1118-5026
Pixu ShiDuke University.
Drew NeishDuke Cancer Institute.
Ashwini JoshiDuke University School of Medicine.
Veronica DuckDuke University School of Medicine.
Ashliegh WilliamsDuke Human Vaccine Institute.
Margaret Gates KuliszewskiUniversity at Albany.
Bin HuangUniversity of Kentucky.
Kevin WardEmory University, Winship Cancer Institute.
Maria PisuUniversity of Alabama at Birmingham.
Thomas TuckerUniversity of Kentucky, Markey Cancer Center.
Rebecca PrevisLabcorp.
Andrew BerchuckDuke University.
Tomi AkinyemijuDuke University School of Medicine.

Funding

Stress-related inflammation and racial disparities in ovarian cancerR37CA233777 · NCI · DUKE UNIVERSITY · PI AKINYEMIJU, TOMI F · 2019 to 2025
$4.2M
SCIENTIFIC, OPERATIONS AND ADMINISTRATIVE RESOURCES (SOAR) TO THE NIH75N95021D00011 · NIDA · GAP SOLUTIONS, INC. · PI RUPPERT, STEVEN · 2025 to 2025
$775k
Elucidating racial and ethnic differences in functional effects of the vaginal microbiome in ovarian cancerK22CA285820 · NCI · DUKE UNIVERSITY · PI Oyomoare L Osazuwa-Peters · 2024 to 2026
$558k
Psychosocial Stress, Vaginal Microbiome, and Ovarian Cancer: An Integrative FrameworkK01CA255408 · NCI · DUKE UNIVERSITY · PI April Deveaux · 2023 to 2026
$491k
NCCDPHP CDC HHS NU58DP006344NCI NIH HHS HHSN261201800003CNCI NIH HHS HHSN261201800009CNCI NIH HHS HHSN261201800009INCI NIH HHS HHSN261201800013CNCI NIH HHS HHSN261201800013INCI NIH HHS HHSN261201800015CNCI NIH HHS HHSN261201800015INCI NIH HHS HHSN261201800032CNCI NIH HHS HHSN261201800032INCI NIH HHS K01 CA255408NCI NIH HHS K22 CA285820NCI NIH HHS R37 CA233777NHLBI NIH HHS 75N92021D00011NIDA NIH HHS 75N95021D00011NIH HHS HHSN261201800005C
6 · The paper itself

Abstract

Background: Vaginal dysbiosis may contribute to ovarian cancer (OC) outcomes, but comprehensive microbiome characterization remains limited. Here, we characterize the prevalence and predictors of vaginal microbiome dysbiosis among diverse OC patients in the US. Methods: We performed 16S rRNA gene sequencing on vaginal samples from 132 OC patients recruited as part of the population-based ORCHiD study. We applied topic modeling using Latent Dirichlet Allocation (LDA), a computational approach for identifying latent microbial community patterns, to identify distinct microbial signatures representing co-occurring bacterial taxa. Results: Widespread dysbiosis was observed with Conclusions: This study revealed widespread vaginal microbiome dysbiosis among OC patients with clinically significant age and racial patterns that may contribute to outcome disparities.

Indexed as

16S rRNA sequencingcancer disparitieshealth disparitiesLactobacillusmicrobiomeORCHiDovarian cancertopic modelingVaginal microbiome

Identifiers

PMID40964039
PMCPMC12440079

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.