Evidence map›Paper›PMID 40963482›Full record

ReviewThe New phytologist2026

Harnessing the benefits of herbarium specimen digitisation for inferring recent and ongoing plant extinctions.

Aelys M Humphreys, Diana O Fisher, Naomi A Witts, Daniele Silvestro, Alexandre Antonelli

Abstract readReview
In one paragraph

Review in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Aelys M HumphreysDepartment of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-2515-6509
Diana O FisherSchool of the Environment, University of Queensland, St Lucia, 4072, Qld, Australia.ORCID https://orcid.org/0000-0002-4017-3710
Naomi A WittsDepartment of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden.ORCID https://orcid.org/0009-0007-4287-1022
Daniele SilvestroDepartment of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, University of Gothenburg, 405 30, Gothenburg, Sweden.ORCID https://orcid.org/0000-0003-0100-0961
Alexandre AntonelliDepartment of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, University of Gothenburg, 405 30, Gothenburg, Sweden.ORCID https://orcid.org/0000-0003-1842-9297

Funding

Australian Research Council DP0773920Australian Research Council FT110100191ETH ZurichRBG Kew DevelopmentSciLifeLab and Wallenberg National Program for Data-Driven Life ScienceSwedish Foundation for Strategic Environmental Research MISTRA F 2022/1448Swedish Research Council 2019-05191Swedish Research Council 2024-04303
6 · The paper itself

Abstract

Evidence for the ongoing biodiversity crisis rests on assessment of a small fraction of described species, with major knowledge gaps for most organisms, including plants. Here, we highlight how digitised herbarium specimens can be used to accelerate and improve estimates of recent and ongoing plant extinctions. We focus on species already considered extinct because they represent a special category for understanding biodiversity loss and a special scientific challenge, as their 'detection' relies on proving absence. We propose that this challenge is embodied by a neglected biodiversity shortfall, the Katuš shortfall, encompassing all facets of unquantified levels of past, present and future biodiversity loss. To address this shortfall, we review how methods for estimating the probability of species extinction can be scaled up to harness the massive amounts of digitised data being produced across the 'global metaherbarium' using artificial intelligence. Thus, we suggest that the Katuš shortfall can be diminished by shifting focus from proving absence to a probabilistic framework. This can contribute to increasing the accuracy of lists of extinct plants and reveal the true extent of the biodiversity crisis.

Indexed as

Extinction, BiologicalPlantsBiodiversityartificial intelligenceglobal extinctionKatuš shortfallmachine learningprobabilistic modellingrediscovery

Identifiers

PMID40963482
PMCPMC13278635

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.