Evidence map›Paper›PMID 40962798›Full record

ArticleNature communications2025

RBM39 degrader invigorates innate immunity to eradicate neuroblastoma despite cancer cell plasticity.

Shivendra Singh, Jie Fang, Hongjian Jin, Lee-Ann Van De Velde, Andrew Cortes, Jiani Chen, Sivaraman Natarajan, Evon Poon, Qiong Wu, Christopher L Morton and 24 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors.

Shivendra Singh *Department of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jie Fang *Department of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Hongjian Jin *Center for Applied Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Lee-Ann Van De Velde *Department of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0009-0000-6205-1151
Andrew Cortes *Department of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jiani ChenDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Sivaraman NatarajanDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-2608-2887
Evon PoonDivision of Clinical Studies, The Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0002-0616-2487
Qiong WuDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-6063-0800
Christopher L MortonDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Mary A WoolardDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Waise QuarniDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jacob A SteeleCenter for Advanced Genome Engineering (CAGE) and Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-9924-2226
Jon P ConnellyCenter for Advanced Genome Engineering (CAGE) and Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Liusheng HeDepartment of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, TN, USA.
Rebecca ThorneCenter for In Vivo Imaging & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Gregory TurnerCenter for In Vivo Imaging & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.
Thomas ConferCenter for In Vivo Imaging & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-1733-0116
Melissa JohnsonCenter for In Vivo Imaging & Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3794-3518
William V CaufieldPreclinical Pharmacokinetics Shared Resource, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3725-3648
Burgess B FreemanPreclinical Pharmacokinetics Shared Resource, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-2174-5119
Timothy LockeyTherapeutics Production and Quality, St. Jude Children's Research Hospital, Memphis, TN, USA.
Andrew J MurphyDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-6747-0355
Peter J MurrayMax Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0001-6329-9802
Takashi OwaEisai Inc., Nutley, NJ, USA.
Shondra M Pruett-MillerCenter for Advanced Genome Engineering (CAGE) and Department of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-3793-585X
Ruoning WangCenter for Childhood Cancer Research, Abigail Wexner Research Institute, Nationwide Children's Hospital, The Ohio State University, Columbus, OH, USA.ORCID http://orcid.org/0000-0001-9798-8032
Louis CheslerDivision of Clinical Studies, The Institute of Cancer Research, London, UK.ORCID http://orcid.org/0000-0001-7842-2068
Julie R ParkDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-6777-9165
Andrew M DavidoffDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-7900-2794
John EastonDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0003-4503-6608
Xiang ChenDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0002-2499-8261
Paul G ThomasDepartment of Host Microbe Interactions, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID http://orcid.org/0000-0001-7955-0256
Jun YangDepartment of Surgery, St. Jude Children's Research Hospital, Memphis, TN, USA. Jun.Yang2@stjude.org.ORCID http://orcid.org/0000-0002-0770-9659

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Shondra Michelle Miller · 1985 to 2026
$166.9M
EXPLORE AND TARGET THE EPIGENETIC VULNERABILITY OF PAX3-FOXO1-DRIVEN RHABDOMYOSARCOMAR01CA266600 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Xiang Chen, Jun Yang · 2022 to 2026
$3.4M
Development of small molecules to target KDM4BR01CA229739 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHEN, TAOSHENG, DAVIDOFF, ANDREW M · 2018 to 2021
$1.6M
Targeting splicing vulnerability of neuroblastomaR01CA303799 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Jun Yang · 2025 to 2026
$1.5M
Targetable epigenetic modifiers that promote neuroblastoma malignancy and plasticityR01CA289881 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Kevin W. Freeman, Jun Yang · 2025 to 2026
$1.4M
American Cancer Society (American Cancer Society, Inc.) 130421-RSG-17-071-01-TBGNCI NIH HHS P30 CA021765NCI NIH HHS R01 CA229739NCI NIH HHS R01 CA266600NCI NIH HHS R01 CA289881NCI NIH HHS R01 CA303799U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R01CA266600U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R01CA289881U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R01CA289881-01A1U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R01CA303799U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) Research Scholar (130421-RSG-17-071-01-TBG, J.Y.) and National Cancer Institute (1R01CA229739
6 · The paper itself

Abstract

The cellular plasticity of neuroblastoma is defined by a mixture of two major cell states, adrenergic and mesenchymal, which may contribute to therapy resistance. However, how neuroblastoma cells switch cellular states during therapy remains largely unknown, and how to eradicate neuroblastoma regardless of its cell state is a clinical challenge. To better understand the cellular plasticity of neuroblastoma in chemoresistance, we define the transcriptomic and epigenetic map of adrenergic and mesenchymal types of neuroblastomas using human and murine models treated with indisulam, a selective RBM39 degrader. We show that cancer cells not only undergo a bidirectional switch between adrenergic and mesenchymal states, but also acquire additional cellular states, reminiscent of the developmental pliancy of neural crest cells. These cell state alterations are coupled with epigenetic reprogramming and dependency switching of cell state-specific transcription factors, epigenetic modifiers, and targetable kinases. Through targeting RNA splicing, indisulam induces an inflammatory tumor microenvironment and enhances the anticancer activity of natural killer cells. The combination of indisulam with anti-GD2 immunotherapy results in a durable, complete response in high-risk transgenic neuroblastoma models, providing an innovative, rational therapeutic approach to eradicate tumor cells regardless of their potential to switch cell states.

Indexed as

Cell PlasticityImmunity, InnateNeuroblastomaRNA-Binding ProteinsAnimalsCell Line, TumorEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansImmunotherapyKiller Cells, NaturalMiceMice, TransgenicRNA SplicingTumor MicroenvironmentRNA-Binding Proteins

Identifiers

PMID40962798
PMCPMC12443969

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.