Evidence map›Paper›PMID 40961137›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

An open-source photobleacher for fluorescence imaging of large pigment-rich tissues.

Tatsuya C Murakami, Nick Belenko, Griffin Dennis, Cuidong Wang, Maria Esterlita Siantoputri, Yurie Maeda, Christina Pressl, Nathaniel Heintz

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Glucagon-Like Peptide-1 Targets in the Human Nodose Ganglion.The Journal of comparative neurology · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tatsuya C Murakami *Laboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.
Nick Belenko *Gruss Lipper Precision Instrumentation Technologies, The Rockefeller University, New York, NY 10065.
Griffin Dennis *Gruss Lipper Precision Instrumentation Technologies, The Rockefeller University, New York, NY 10065.ORCID 0009-0005-3443-8056
Cuidong WangLaboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.ORCID 0009-0006-1435-0097
Maria Esterlita SiantoputriLaboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.
Yurie MaedaLaboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.
Christina PresslLaboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.ORCID 0000-0001-6108-2263
Nathaniel HeintzLaboratory of Molecular Biology, The Rockefeller University, New York, NY 10065.ORCID 0000-0002-8874-8704

Funding

CHDI Foundation (CHDI) Nathaniel HeintzJapanese Society for Promotion of Science Overseas Research Fellowship Tatsuya MurakamiLeon Levy Scholarships in Neuroscience Tatsuya MurakamiThe Fisher Center for Alzheimer's Research Foundation Nathaniel Heintz
6 · The paper itself

Abstract

Fluorescence imaging enables visualization of the specific molecules of interest with high contrast, and the use of multiple fluorophores in a single tissue sample allows visualization of complex relationships between biological molecules, cell types, and anatomy. The utility of fluorescence imaging in human tissue has been limited by endogenous pigments that can block the light path or emit an autofluorescence, thereby interfering with the specific imaging of target molecules. Although photobleachers have been developed to quench endogenous pigments, the lack of customizability limits their utility for a broad range of applications. Here, we present a high luminous-intensity photobleacher that is based on rigorous simulations of illumination patterns, along with the framework to maximize bleaching efficiency. This open-source project is designed to help scientists customize and scale the device according to their research goals. The photobleacher is applicable to both thin tissue slices and large-volume cleared tissue samples to enable serial three-dimensional imaging of postmortem human brain using multiplexed antibody or oligonucleotide probes.

Indexed as

Optical ImagingPhotobleachingPigments, BiologicalSoftwareBrainFluorescent DyesHumansImaging, Three-DimensionalMicroscopy, FluorescenceFluorescent DyesPigments, Biologicalimmunofluorescenceneuroanatomyphotobleaching

Identifiers

PMID40961137
PMCPMC12478079

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.