Evidence map›Paper›PMID 40960655›Full record

ArticlePhotosynthesis research2025

Comparative analysis of biochemical and sequence features of PSI-LHCI supercomplexes from Cyanidium caldarium NIES-551 and Cyanidiococcus yangmingshanensis NIES-2137.

Ibuki Y Takahashi, Takehiro Suzuki, Shunsuke Hirooka, Naoshi Dohmae, Shin-Ya Miyagishima, Ryo Nagao

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Photosynthesis research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ibuki Y TakahashiFaculty of Agriculture, Shizuoka University, Shizuoka, 422-8529, Japan.
Takehiro SuzukiBiomolecular Characterization Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.
Shunsuke HirookaDepartment of Gene Function and Phenomics, National Institute of Genetics, Shizuoka, 411-8540, Japan.
Naoshi DohmaeBiomolecular Characterization Unit, RIKEN Center for Sustainable Resource Science, Saitama, 351-0198, Japan.
Shin-Ya MiyagishimaDepartment of Gene Function and Phenomics, National Institute of Genetics, Shizuoka, 411-8540, Japan.
Ryo NagaoFaculty of Agriculture, Shizuoka University, Shizuoka, 422-8529, Japan. nagry@shizuoka.ac.jp.

Funding

Japan Society for the Promotion of Science JP23H02423
6 · The paper itself

Abstract

Cyanidiophyceae represent basal, extremophilic taxa subdivided into several genetically distinct orders. While photosystem I supercomplexes containing light-harvesting complexes (PSI-LHCI) have been characterized in Cyanidioschyzonales and Galdieriales, their organization in Cyanidiales remains poorly understood. Here, we purified the PSI-LHCI supercomplex from Cyanidium caldarium NIES-551, and analyzed its biochemical and spectroscopic properties. SDS-PAGE and mass spectrometry identified canonical PSI and LHCI subunits. The chloroplast-encoded PSI proteins were identical to those of a previously sequenced Cd. caldarium strain. Comparative sequence analysis revealed substantial divergence in both PSI and LHCI proteins between the NIES-551 strain and Cyanidiococcus yangmingshanensis NIES-2137, a strain recently reclassified from Cd. caldarium. Pigment profiling of PSI-LHCI showed similar species across strains, yet carotenoid-to-chlorophyll a ratios were lower in NIES-551. 77-K fluorescence-emission spectra of PSI-LHCI highlighted a red-shifted emission peak in NIES-551 (734 nm) relative to NIES-2137 (727 nm), suggesting differences in pigment configuration and excitation-energy transfer. These findings indicate that PSI-LHCI in NIES-551 possesses lineage-specific pigment composition and LHCI organization. Together, these characteristics likely represent hallmarks of PSI-LHCI in Cyanidiales. Our results reinforce the evolutionary distinctiveness of Cyanidiales within Cyanidiophyceae and provide a foundation for future structural studies that will clarify the diversification of photosynthetic architecture in early-diverging red algae.

Indexed as

Light-Harvesting Protein ComplexesPhotosystem I Protein ComplexRhodophytaCarotenoidsPhylogenyCarotenoidsLight-Harvesting Protein ComplexesPhotosystem I Protein ComplexCyanidiophyceaeNIES-2137NIES-551PSI-LHCI

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.