Evidence map›Paper›PMID 40957983›Full record

ArticleNature structural & molecular biology2025

Phase separation promotes Atg8 lipidation and vesicle condensation for autophagy progression.

Yuko Fujioka, Takuma Tsuji, Tetsuya Kotani, Hiroyuki Kumeta, Chika Kakuta, Junko Shimasaki, Toyoshi Fujimoto, Hitoshi Nakatogawa, Nobuo N Noda

Abstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Autophagy in the liver.Autophagy reports · 2026
    Review
  5. Article
  6. Mechanisms of autophagosome formation.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yuko FujiokaInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan. fujioka@igm.hokudai.ac.jp.ORCID http://orcid.org/0000-0002-6905-0669
Takuma TsujiInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan.
Tetsuya KotaniCell Biology Center, Institute of Integrated Research, Institute of Science Tokyo, Yokohama, Japan.
Hiroyuki KumetaFaculty of Advanced Life Science, Hokkaido University, Sapporo, Japan.ORCID http://orcid.org/0000-0003-3713-2122
Chika KakutaCell Biology Center, Institute of Integrated Research, Institute of Science Tokyo, Yokohama, Japan.
Junko ShimasakiCell Biology Center, Institute of Integrated Research, Institute of Science Tokyo, Yokohama, Japan.
Toyoshi FujimotoResearch Institute for Diseases of Old Age, Juntendo University Graduate School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0002-3601-7977
Hitoshi NakatogawaCell Biology Center, Institute of Integrated Research, Institute of Science Tokyo, Yokohama, Japan.ORCID http://orcid.org/0000-0002-5828-0741
Nobuo N NodaInstitute for Genetic Medicine, Hokkaido University, Sapporo, Japan. nn@igm.hokudai.ac.jp.ORCID http://orcid.org/0000-0002-6940-8069

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Upon starvation, the autophagy-initiating Atg1 complex undergoes phase separation to organize the preautophagosomal structure (PAS) in Saccharomyces cerevisiae, from which autophagosome formation is considered to proceed. However, the physiological roles of the PAS droplet remain unclear. Here we show that core Atg proteins are recruited into early PAS droplets that are formed by phase separation of the Atg1 complex with different efficiencies in vitro. The Atg12-Atg5-Atg16 E3 ligase complex for Atg8 lipidation is the most efficiently condensed in the droplets through specific Atg12-Atg17 interaction, which is also important for the PAS targeting of the E3 complex in vivo. In vitro reconstitution demonstrates that E3-enriched early PAS droplets promote Atg8 lipidation and that Atg8 coating of the vesicle membrane is both necessary and sufficient for their condensation into the droplets. These data suggest that the PAS functions as an efficient production site for lipidated Atg8 and pools membrane seeds to drive autophagosome formation.

Indexed as

AutophagosomesAutophagyAutophagy-Related Protein 8 FamilySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAutophagy-Related Protein 12Autophagy-Related Protein 5Autophagy-Related ProteinsMicrotubule-Associated ProteinsPhase SeparationProtein KinasesUbiquitin-Protein LigasesATG12 protein, S cerevisiaeATG16 protein, S cerevisiaeAtg17 protein, S cerevisiaeATG1 protein, S cerevisiaeATG5 protein, S cerevisiaeATG8 protein, S cerevisiaeAutophagy-Related Protein 12Autophagy-Related Protein 5Autophagy-Related Protein 8 FamilyAutophagy-Related ProteinsMicrotubule-Associated ProteinsProtein KinasesSaccharomyces cerevisiae ProteinsUbiquitin-Protein Ligases

Identifiers

PMID40957983

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.