Evidence map›Paper›PMID 40957911›Full record

ArticleNature cell biology2025

Two microbiome metabolites compete for tRNA modification to impact mammalian cell proliferation and translation quality control.

Wen Zhang, Kuldeep Lahry, Denis Cipurko, Sihao Huang, Olivia Zbihley, Amanda M Sevilleja, Dominika Rudzka, Luke R Frietze, Mahdi Assari, Christopher D Katanski and 15 more

Abstract read
In one paragraph

Article in Nature cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Wen Zhang *Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-8577-2613
Kuldeep Lahry *IRCM, University of Montpellier, Montpellier, France.ORCID http://orcid.org/0000-0002-6723-363X
Denis Cipurko *Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Sihao HuangDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Olivia ZbihleyDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1887-4112
Amanda M SevillejaPritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Dominika RudzkaDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Luke R FrietzeDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-6224-4444
Mahdi AssariDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0009-0002-9247-4221
Christopher D KatanskiDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Marisha SinghDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Aurore AttinaIRMB-PPC, INM, CHU Montpellier, University of Montpellier, Montpellier, France.
Hélène GuilloritIRCM, University of Montpellier, Montpellier, France.
Christopher P WatkinsDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Delphine GourlainSynthenova, Hérouville Saint Clair, France.ORCID http://orcid.org/0009-0007-9507-297X
Didier VarletSynthenova, Hérouville Saint Clair, France.
Jennifer FalconiIRCM, University of Montpellier, Montpellier, France.
Alexandre DjianeIRCM, University of Montpellier, Montpellier, France.ORCID http://orcid.org/0000-0001-6210-2713
Christophe HirtzIRMB-PPC, INM, CHU Montpellier, University of Montpellier, Montpellier, France.ORCID http://orcid.org/0000-0002-7313-0629
Hankui ChenDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Françoise MacariIRCM, University of Montpellier, Montpellier, France.
Katherine JohnsonPritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA.
Nicolas ChevrierPritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA. nchevrier@uchicago.edu.ORCID http://orcid.org/0000-0002-9667-4506
Alexandre DavidIRCM, University of Montpellier, Montpellier, France. alexandre.david@inserm.fr.ORCID http://orcid.org/0000-0003-3365-1339
Tao PanDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA. taopan@uchicago.edu.ORCID http://orcid.org/0000-0003-1096-8405

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI LIU, CAMBRIAN YANGSHAO · 1990 to 2025
$29.8M
Transcriptome-wide base-resolution sequencing of pseudouridine in human normal and AD brain tissues-CEGS Admin supplement 2020-2021RM1HG008935 · NHGRI · UNIVERSITY OF CHICAGO · PI HE, CHUAN · 2016 to 2025
$24.4M
Medical Scientist National Research Service AwardT32GM150375 · NIGMS · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2023 to 2026
$5.5M
Molecular Mechanisms of Adjuvant Triplet CombinationsU01AI160418 · NIAID · UNIVERSITY OF CHICAGO · PI CHEVRIER, NICOLAS · 2021 to 2025
$3.1M
Building a Predictive Framework for Adjuvant Combinatorics in Vaccine DevelopmentDP2AI145100 · NIAID · UNIVERSITY OF CHICAGO · PI CHEVRIER, NICOLAS · 2018 to 2018
$2.4M
Transfer RNA sequencing and application to cancer research and clinicsR33CA272357 · NCI · UNIVERSITY OF CHICAGO · PI BISSONNETTE, BRUCE MARC, PAN, TAO · 2022 to 2024
$1.2M
Spatiomolecular Profiling of Human Cancer at ScaleR33CA297902 · NCI · UNIVERSITY OF CHICAGO · PI Nicolas Chevrier · 2025 to 2026
$743k
NCI NIH HHS R33 CA272357NCI NIH HHS R33 CA297902NHGRI NIH HHS RM1 HG008935NIAID NIH HHS DP2 AI145100NIAID NIH HHS U01 AI160418NIDDK NIH HHS P30 DK042086NIGMS NIH HHS T32 GM007281NIGMS NIH HHS T32 GM150375University of Chicago (UChicago) P30 DK42086U.S. Department of Health & Human Services | National Institutes of Health (NIH) R33CA272357U.S. Department of Health & Human Services | National Institutes of Health (NIH) RM1HG008935
6 · The paper itself

Abstract

The microbiome affects eukaryotic host cells via many metabolites, including the well-studied queuine as substrate for host tRNA queuosine modification. The microbial metabolite pre-queuosine 1 (preQ

Indexed as

Cell ProliferationMicrobiotaNucleoside QProtein BiosynthesisRNA, TransferAnimalsHumansMiceRibosomesNucleoside QRNA, Transfer

Identifiers

PMID40957911
PMCPMC13267997

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.