Evidence map›Paper›PMID 40957658›Full record

ArticleGenome research2025

Long-read sequencing reveals HBV integration patterns and oncogenic impact on early-onset hepatocellular carcinoma.

Yao Wang, Dong Yu, Yue Mei, ZhiDa Fu, Jian Lin, Di Wu, Yuan Yang, Hongli Yan

Abstract read
In one paragraph

Article in Genome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yao Wang *Center for Reproductive Medicine, Changhai Hospital, Naval Medical University, Shanghai, China 200433.
Dong Yu *Institute of Translational Medicine, Naval Medical University, Shanghai, China 200433.
Yue Mei *Institute of Translational Medicine, Naval Medical University, Shanghai, China 200433.
ZhiDa Fu *Center for Reproductive Medicine, Changhai Hospital, Naval Medical University, Shanghai, China 200433.
Jian LinThe First Affiliated Hospital, Fujian Medical University, Fuzhou, Fujian, China 350004.
Di WuCelula Medical Technology Corporation, Limited, Chengdu, China 610041.
Yuan YangThird Department of Hepatic Surgery, Eastern Hepatobiliary Surgery Hospital, Naval Medical University, Shanghai, China 200438.
Hongli YanCenter for Reproductive Medicine, Changhai Hospital, Naval Medical University, Shanghai, China 200433; hongliyan@smmu.edu.cn.ORCID 0000-0001-6366-0370

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis B virus (HBV) integration is a key driver of hepatocellular carcinoma (HCC) occurrence and progression; however, its oncogenic mechanisms remain incompletely understood because of limitations in detection methods and sample availability. In this study, we employ Oxford Nanopore Technologies (ONT) whole-genome sequencing and full-length transcriptome sequencing to characterize HBV integration events at the genomic and transcriptomic levels, along with their regulatory effects on structural variations (SVs) and gene expression. Functional validation is performed using dual-luciferase assays and cell-based experiments. Our findings reveal that integrated HBV sequences form long concatemers, mediating inter- and intrachromosomal recombination in the human genome. Notably, integrated HBV enhancer I (HBV-

Indexed as

Carcinoma, HepatocellularHepatitis BHepatitis B virusLiver NeoplasmsVirus IntegrationAdultAge of OnsetCell Line, TumorChromosomes, HumanEnhancer Elements, GeneticGene Expression Regulation, NeoplasticGene RearrangementGenome, HumanHumansOncogenesTranscriptome

Identifiers

PMID40957658
PMCPMC12581849

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.