Evidence map›Paper›PMID 40957402›Full record

ReviewCell reports methods2025

Methods, applications, and computational challenges in bait capture enrichment.

Jonathan E Bravo, Kimberly J Newsom, Noelle Noyes, Christina Boucher

Abstract readReview
In one paragraph

Review in Cell reports methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jonathan E BravoDepartment of Computer and Information Science and Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, FL, USA. Electronic address: jonathan.bravo@ufl.edu.
Kimberly J NewsomDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL, USA.
Noelle NoyesDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul, MN, USA.
Christina BoucherDepartment of Computer and Information Science and Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, FL, USA. Electronic address: christinaboucher@ufl.edu.

Funding

Triple-enriched metagenomics for robust resistome analysisR01AI173928 · NIAID · UNIVERSITY OF MINNESOTA · PI Noelle Noyes · 2024 to 2026
$2.2M
Developing Computational Methods for Surveillance of Antimicrobial Resistant AgentsR01AI141810 · NIAID · UNIVERSITY OF FLORIDA · PI BOUCHER, CHRISTINA, PROSPERI, MATTIA · 2019 to 2023
$2.1M
NIAID NIH HHS R01 AI141810NIAID NIH HHS R01 AI173928
6 · The paper itself

Abstract

Bait capture enrichment techniques have revolutionized our understanding of complex biological systems by enabling the selective isolation of specific genomic regions for detailed study. This review offers a comprehensive examination of bait capture enrichment, evaluating its advantages, limitations, and applications. We explore the computational challenges inherent in bait capture enrichment, including bait design, deduplication, variant detection, and the modeling of off-target binding. Current solutions and open problems in these areas are discussed, highlighting potential future research directions. By addressing these challenges and improving bait capture methodologies, we can enhance the ability to investigate genomic regions of interest with greater precision and efficiency, ultimately advancing our understanding of fundamental genetic and biological processes.

Indexed as

Computational BiologyGenomicsHumansantimicrobial resistanceCP: biotechnologyCP: computational biologyhybridization capturepathogen detectiontargeted sequencingviromics

Identifiers

PMID40957402
PMCPMC12539256

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.