Evidence map›Paper›PMID 40956060›Full record

ArticleJournal of chemical theory and computation2025

Deciphering Dickerson-Drew DNA Equilibrium beyond the BI/BII DNA Dichotomy by Interpretation of

Jiří Fukal, Miloš Buděšínský, Jakub Šebera, Marie Zgarbová, Petr Jurečka, Vladimír Sychrovský

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jiří FukalInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Praha 6, Czech Republic.
Miloš BuděšínskýInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Praha 6, Czech Republic.
Jakub ŠeberaJ. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, 182 00 Prague 8, Czech Republic.ORCID 0000-0001-5671-5206
Marie ZgarbováDepartment of Physical Chemistry, Faculty of Science, Palacký University Olomouc, 77146 Olomouc, Czech Republic.ORCID 0000-0003-0719-0268
Petr JurečkaDepartment of Physical Chemistry, Faculty of Science, Palacký University Olomouc, 77146 Olomouc, Czech Republic.ORCID 0000-0002-3741-3672
Vladimír SychrovskýInstitute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 166 10 Praha 6, Czech Republic.ORCID 0000-0002-9506-9224

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA duplexes exist as dynamic ensembles of interconverting conformations in solution. Conventional nuclear magnetic resonance (NMR) data interpretation often simplifies this behavior by assuming one dominant structure, but multiple substates (such as different backbone conformers) can coexist. Here, we present an approach that refines the interpretation of

Indexed as

DNAMagnetic Resonance SpectroscopyMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularNucleic Acid ConformationDNA

Identifiers

PMID40956060
PMCPMC12529900

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.