Evidence map›Paper›PMID 40954310›Full record

ArticleNature neuroscience2025

Recurrent pattern completion drives the neocortical representation of sensory inference.

Hyeyoung Shin, Mora B Ogando, Lamiae Abdeladim, Uday K Jagadisan, Severine Durand, Ben Hardcastle, Hannah Belski, Hannah Cabasco, Henry Loefler, Ahad Bawany and 17 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Ecological Visual Processing in the Mouse.Annual review of neuroscience · 2026
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Hyeyoung ShinDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. hyeyoung_shin@snu.ac.kr.ORCID http://orcid.org/0000-0002-7587-8577
Mora B OgandoDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Lamiae AbdeladimDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-5015-8653
Uday K JagadisanDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-4253-6041
Severine DurandAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-7788-0200
Ben HardcastleAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-4819-5631
Hannah BelskiAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Hannah CabascoAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Henry LoeflerAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Ahad BawanyAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0009-0002-5495-5411
Josh WilkesAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Katrina NguyenAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Lucas SuarezAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Tye JohnsonAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Warren HanAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Ben OuelletteAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Conor GrassoAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Jackie SwappAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Vivian HaAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0009-0005-0093-3825
Ahrial YoungAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Shiella CaldejonAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Ali WillifordAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0009-0000-7282-7515
Peter A GroblewskiAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Shawn OlsenAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-9568-7057
Carly KiselycznykAllen Institute, Neural Dynamics Program, Seattle, WA, USA.
Jerome LecoqAllen Institute, Neural Dynamics Program, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-0131-0938
Hillel AdesnikDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA. hadesnik@berkeley.edu.ORCID http://orcid.org/0000-0002-3796-8643

Funding

Validating Theoretical Models with Neurophysiology and OptogeneticsU19NS107613 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ADESNIK, HILLEL · 2018 to 2022
$16.7M
OpenScope: A Platform for High-Throughput and Reproducible Neurophysiology Open to External Scientists to Test Impactful Theories of Brain FunctionU24NS113646 · NINDS · ALLEN INSTITUTE · PI KOCH, CHRISTOF, LECOQ, JEROME ANTHONY-JEAN · 2021 to 2025
$6.7M
Excitation and Inhibition in Neural Circuits of the Visual CortexR01EY023756 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Hillel Adesnik · 2013 to 2026
$6.1M
High-throughput Physiological Micro-connectivity Mapping in VivoRF1MH120680 · NIMH · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADESNIK, HILLEL · 2019 to 2021
$2.2M
National Research Foundation of Korea (NRF) RS-2023-00301976National Research Foundation of Korea (NRF) RS-2024-00358070National Research Foundation of Korea (NRF) RS-2024-00413689NEI NIH HHS R01 EY023756NIMH NIH HHS RF1 MH120680NINDS NIH HHS U19 NS107613NINDS NIH HHS U24 NS113646Seoul National University New Faculty Startup FundU.S. Department of Health & Human Services | National Institutes of Health (NIH) U19NS107613U.S. Department of Health & Human Services | National Institutes of Health (NIH) U24NS113646
6 · The paper itself

Abstract

When sensory information is incomplete, the brain relies on prior expectations to infer perceptual objects. Despite the centrality of this process to perception, the neural mechanisms of sensory inference are not understood. Here we used illusory contours (ICs), multi-Neuropixels measurements, mesoscale two-photon (2p) calcium imaging and 2p holographic optogenetics in mice to reveal the neural codes and circuits of sensory inference. We discovered a specialized subset of neurons in primary visual cortex (V1) that respond emergently to illusory bars but not to component image segments. Selective holographic photoactivation of these 'IC-encoders' recreated the visual representation of ICs in V1 in the absence of any visual stimulus. These data imply that neurons that encode sensory inference are specialized for receiving and locally broadcasting top-down information. More generally, pattern completion circuits in lower cortical areas may selectively reinforce activity patterns that match prior expectations, constituting an integral step in perceptual inference.

Indexed as

NeocortexNeuronsPrimary Visual CortexVisual CortexVisual PerceptionAnimalsFemaleIllusionsMaleMiceMice, Inbred C57BLMice, TransgenicOptogeneticsPhotic Stimulation

Identifiers

PMID40954310
PMCPMC12586158

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.