Evidence map›Paper›PMID 40953060›Full record

ArticlePLoS pathogens2025

Differential tissue tropism and transmission efficiency of two dominant influenza D clades with overlapping but distinct receptor binding fine specificities in ferrets.

Tirth Uprety, Chithra C Sreenivasan, Jieshi Yu, Miaoyun Zhao, Runxia Liu, Hai Yu, Ahsan Naveed, Lianne G Eertink, Shalini Soni, Rebecca E Ruby and 6 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Tirth UpretyDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.ORCID 0000-0003-1945-1875
Chithra C SreenivasanDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Jieshi YuDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Miaoyun ZhaoNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Runxia LiuDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota, United States of America.
Hai YuDepartment of Chemistry, University of California, Davis, California, United States of America.
Ahsan NaveedDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Lianne G EertinkDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Shalini SoniDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Rebecca E RubyDepartment of Veterinary Science, Veterinary Diagnostic Laboratory, University of Kentucky, Lexington, Kentucky, United States of America.
Xi ChenDepartment of Chemistry, University of California, Davis, California, United States of America.
Radhey S KaushikDepartment of Biology and Microbiology, South Dakota State University, Brookings, South Dakota, United States of America.
Zizhang ShengAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, United States of America.
Qingsheng LiNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.
Dan WangDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
Feng LiDepartment of Veterinary Science, M. H. Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.ORCID 0000-0002-8904-2893

Funding

Influenza D Virus Entry and Tissue TropismR01AI141889 · NIAID · UNIVERSITY OF KENTUCKY · PI LI, FENG · 2018 to 2022
$2.6M
NIAID NIH HHS R01 AI141889
6 · The paper itself

Abstract

Influenza D virus (IDV) utilizes bovines as a primary reservoir causing periodical spillover to pigs and other hosts. In this study, we utilized ferrets to study IDV with a focus on the role of the Hemagglutinin-Esterase-Fusion (HEF) protein in the replication, tissue tropism, and transmission of two dominant clades of IDV- swine D/OK, and bovine D/660. In addition to swine D/OK, we rescued a chimeric virus (D/OK660HEF) expressing the bovine D/660 HEF using reverse genetic system. Two isogenic IDVs differing only in the HEF protein were characterized in ferrets with respect to viral shedding, tissue tropism, transmission, and pathogenesis. Ferrets intranasally infected with D/OK and D/OK660HEF showed similar levels of viral shedding but exhibited slight differences in transmission efficiency to contact sentinel ferrets. Specifically, D/OK replicated mostly in the upper respiratory tract and transmitted to 2/3 naive ferrets, while D/OK660HEF replicated in both upper and lower respiratory tract (trachea) but transmitted only to 1/3 naive ferrets. Both direct inoculated and contact sentinel ferrets seroconverted at 14 days post-infection, which indicated an association with viral replication fitness and transmission efficiency. Distinct receptor fine specificities plus six amino acid mutations in the receptor binding domain of the HEF protein between swine D/OK and bovine D/660 viruses may explain the different tissue tropism and transmission efficiency observed between these two viruses. Furthermore, while no detectable virus titers were observed in the lungs and intestines of ferrets, fluorescent RNAscope probe-based in-situ hybridization assay detected viral RNAs in these tissues. Finally, deep-sequencing revealed ferret-adapted mutations in PB1, PB2, and M segments that have not appeared in natural IDV isolates from bovines or pigs which need further characterization. Taken together, results of this study demonstrate that IDV is optimized for replication and spread in mammals and subtle mutations in HEF protein may affect viral tropism and transmission efficiency.

Indexed as

Orthomyxoviridae InfectionsThogotovirusViral TropismAnimalsCattleFerretsSwineViral Fusion ProteinsVirus ReplicationVirus SheddingViral Fusion Proteins

Identifiers

PMID40953060
PMCPMC12435653

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.