Evidence map›Paper›PMID 40953050›Full record

ArticlePloS one2025

Enhancing epidemic forecasting with a physics-informed spatial identity neural network.

Satoki Fujita, Tatsuya Akutsu

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Satoki FujitaBioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.ORCID https://orcid.org/0000-0002-0107-4402
Tatsuya AkutsuBioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Forecasting the future number of confirmed cases in each region is a critical challenge in controlling the spread of infectious diseases. Accurate predictions enable the proactive development of optimal containment strategies. Recently, deep learning-based models have increasingly leveraged graph structures to capture the spatial dynamics of epidemic spread. While intuitive, this approach often increases model complexity, and the resulting performance gains may not justify the added burden. In some cases, it may even lead to overfitting. Moreover, infectious disease data is typically noisy, making it difficult to extract infectious disease-specific dynamics from data without guidance based on epidemiological domain knowledge. To address these issues, we propose a simple yet effective hybrid model for multi-region epidemic forecasting, termed Physics-Informed Spatial IDentity neural network (PISID). This model integrates a spatio-temporal identity (STID)-based neural network module, which encodes spatio-temporal information without relying on graph structures, with an SIR module grounded in classical epidemiological dynamics. Regional characteristics are incorporated via a spatial embedding matrix, and epidemiological parameters are inferred through a fully connected neural network. These parameters are then used to govern the dynamics of the SIR model for forecasting purposes. Experiments on real-world datasets demonstrate that the proposed PISID model achieves stable and superior predictive performance compared to baseline models, with approximately 27K parameters and an average training time of 0.45 seconds per epoch. Additionally, ablation studies validate the effectiveness of the neural network's encoding architecture, and analysis of the decoded epidemiological parameters highlights the model's interpretability. Overall, PISID contributes to reliable epidemic forecasting by integrating data-driven learning with epidemiological domain knowledge.

Indexed as

EpidemicsNeural Networks, ComputerDeep LearningForecastingHumans

Identifiers

PMID40953050
PMCPMC12435659

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.