Evidence map›Paper›PMID 40951776›Full record

ArticleChemical science2025

Structural and spectroscopic basis of excitation energy transfer in microbial rhodopsins binding xanthophylls.

Giacomo Salvadori, Piermarco Saraceno, Alisia Santomieri, Chris John, Laura Pedraza-González

Erratum issuedAbstract read
In one paragraph

Article in Chemical science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Protonation-Enhanced Energy Transfer in Xanthorhodopsin Kin4B8.The journal of physical chemistry letters · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Giacomo SalvadoriInstitute for Computational Biomedicine (INM-9), Forschungszentrum Jülich 52428 Jülich Germany.ORCID https://orcid.org/0000-0001-7330-6228
Piermarco SaracenoDipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy laura.pedraza@unipi.it.ORCID https://orcid.org/0009-0001-2135-5930
Alisia SantomieriDipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy laura.pedraza@unipi.it.
Chris JohnDipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy laura.pedraza@unipi.it.ORCID https://orcid.org/0000-0002-9113-5271
Laura Pedraza-GonzálezDipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy laura.pedraza@unipi.it.ORCID https://orcid.org/0000-0002-9806-236X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carotenoids serve as accessory light-harvesting pigments in microbial rhodopsins, but the mechanisms enabling efficient energy transfer in systems lacking canonical 4-keto groups remain poorly understood. Here, we combine long-timescale molecular dynamics, polarizable quantum mechanics/molecular mechanics (QM/MM) calculations, and excitonic modeling to elucidate the structural and electronic factors that govern carotenoid-to-retinal excitation energy transfer (EET) in the proton-pumping rhodopsin Kin4B8. Focusing on the xanthophylls, zeaxanthin and lutein, we show they support ultrafast (<100 fs) and high-efficiency (≈70%) EET, enabled not by specific functional groups but by precise protein-ligand geometry. The carotenoid's β-ring is anchored

Identifiers

PMID40951776
PMCPMC12423958

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.