Evidence map›Paper›PMID 40950714›Full record

ArticleComputational toxicology (Amsterdam, Netherlands)2025

The FAIR AOP roadmap for 2025: Advancing findability, accessibility, interoperability, and re-usability of adverse outcome pathways.

Holly M Mortensen, Maciej Gromelski, Ginnie Hench, Marvin Martens, Clemens Wittwehr, Saurav Kumar, Vikas Kumar, Karine Audouze, Vassilis Virvilis, Penny Nymark and 6 more

Abstract read
In one paragraph

Article in Computational toxicology (Amsterdam, Netherlands), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Holly M MortensenPublic Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC, USA.ORCID 0000-0002-3180-5229
Maciej GromelskiQSAR Lab Ltd. ul. Trzy Lipy 3, Budynek B, 80-172 Gdansk, PL, Poland.ORCID 0000-0001-5185-8208
Ginnie HenchRTI International 3040 E Cornwallis Rd, RTP, NC, USA.ORCID 0000-0002-3612-8036
Marvin MartensDepartment of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, Maastricht, NL, the Netherlands.ORCID 0000-0003-2230-0840
Clemens WittwehrEuropean Commission, Joint Research Centre (JRC), Ispra, IT, Italy.ORCID 0000-0003-2760-7702
Saurav KumarIISPV, Universitat Rovira I Virgili, Tarragona, ES, German Federal Institute for Risk Assessment (BfR), Berlin, DE, Germany.ORCID 0000-0003-0593-2598
Vikas KumarIISPV, Universitat Rovira I Virgili, Tarragona, ES, German Federal Institute for Risk Assessment (BfR), Berlin, DE, Germany.ORCID 0000-0002-8062-7123
Karine AudouzeUniversité Paris Cité, HealthFex, Inserm, FR, France.ORCID 0000-0001-7525-4089
Vassilis VirvilisBiovista, Charlottesville, VA, USA.
Penny NymarkInstitute of Environmental Medicine, Karolinska Institute, Stockholm, SE, Sweden.
Michelle AngrishCenter for Public Health and Environmental Assessment, Chemical Pollutant Assessment Division, US Environmental Protection Agency, Durham, NC, USA.
Iseult LynchEnvironmental Nanosciences, School of Geography, Earth and Environmental Sciences, University of Birmingham, UK.ORCID 0000-0003-4250-4584
Stephen EdwardsCenter for Computational Toxicology and Exposure, Scientific Computing and Data Curation Division, US Environmental Protection Agency, Durham, NC, USA.
Barbara MagagnaGO FAIR Foundation, Rijnsburgerweg 10, 2333 AA Leiden, NL, the Netherlands.ORCID 0000-0003-2195-3997
Marcin W WojewodzicCancer Registry of Norway & Department of Chemical Toxicology, Norwegian Institute of Public Health, Oslo, NO, Norway.
FAIR AOP Cluster Working Group

Funding

Intramural EPA EPA999999
6 · The paper itself

Abstract

Adverse Outcome Pathways (AOPs) describe the mechanistic interactions of biological entities with a stressor (chemical, nanomaterial, radiation, virus, etc.) that produce an adverse response. How these interactions and associations are catalogued contributes to our ability to understand mechanistic effects and apply this knowledge to New Approach Methods (NAMs) that have the potential to reduce animal testing in chemical, biological, and material safety assessments. Making AOP data align with FAIR (Findable, Accessible, Interoperable, and Reusable) metadata standards relies on technical tools that implement and process AOP data and related metadata, and the establishment of coordinated and consensus computational bioinformatic methods. Herein current efforts in addressing the FAIRification of AOP mechanistic data and metadata, as well as the international, collaborative efforts to document, and improve the (re)-use and reliability of AOP information will be described. These coordinated efforts contribute to the establishment of a directive for the processing and storing of standardized AOP mechanistic data in the AOP-Wiki repository, and application of these data to next generation risk assessment.

Indexed as

AnnotationAOPArtificial intelligence (AI)BiomedicalComputational toxicologyDatabaseData domainData integrationEnvironmental health scienceFAIRGeneMechanisticNatural language processingNew Approach Methods (NAMs)Next generation risk assessmentOMICsPathwayProteinProteomicToxicology

Identifiers

PMID40950714
PMCPMC12425154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.