Evidence map›Paper›PMID 40950208›Full record

ArticlebioRxiv : the preprint server for biology2025

Regulatory logic of neuronal identity specification in

Rose Coyne, McKenzie Treese, Yen-Chung Chen, Cathleen Lake, Ojong Besong Tabi, Raghuvanshi Rajesh, Huzaifa Hassan, Hua Li, Claude Desplan, Mehmet Neset Özel

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Rose CoyneStowers Institute for Medical Research, Kansas City, MO 64110, USA.
McKenzie TreeseStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Yen-Chung ChenDepartment of Biology, New York University, New York, NY 10003, USA.
Cathleen LakeStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Ojong Besong TabiStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Raghuvanshi RajeshDepartment of Biology, New York University, New York, NY 10003, USA.
Huzaifa HassanStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Hua LiStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Claude DesplanDepartment of Biology, New York University, New York, NY 10003, USA.
Mehmet Neset ÖzelStowers Institute for Medical Research, Kansas City, MO 64110, USA.

Funding

Signaling from photoreceptors to the optic lobesR01EY013012 · NEI · NEW YORK UNIVERSITY · PI DESPLAN, CLAUDE · 1999 to 2024
$9.4M
Stochastic choices in the retina and optic lobesR01EY013010 · NEI · NEW YORK UNIVERSITY · PI DESPLAN, CLAUDE · 1999 to 2025
$9.1M
Neurogenesis of the optic lobesR01EY017916 · NEI · NEW YORK UNIVERSITY · PI Claude Desplan · 2007 to 2026
$8.0M
Gene Regulatory Networks of Synaptic SpecificityR00NS125117 · NINDS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI Mehmet Neset Ozel · 2024 to 2026
$740k
Gene Regulatory Networks of Synaptic SpecificityK99NS125117 · NINDS · NEW YORK UNIVERSITY · PI OZEL, MEHMET NESET · 2022 to 2023
$254k
NEI NIH HHS R01 EY013010NEI NIH HHS R01 EY013012NEI NIH HHS R01 EY017916NINDS NIH HHS K99 NS125117NINDS NIH HHS R00 NS125117
6 · The paper itself

Abstract

During neurogenesis, signaling molecules and transcription factors (TFs) pattern neural progenitors across space and time to generate the numerous cell types that constitute neural circuits. In postmitotic neurons, these identities are established and maintained by a class of TFs known as terminal selectors (tsTFs). However, it remains largely unclear how the tsTF combinations are specified, and how they then coordinate the type-specific differentiation programs of each neuron. To investigate these regulatory mechanisms, we performed simultaneous single-cell RNA and ATAC sequencing on the

Identifiers

PMID40950208
PMCPMC12424757

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.