Evidence map›Paper›PMID 40950033›Full record

ArticlebioRxiv : the preprint server for biology2025

Incubator-Free Organoid Culture in a Sealed Recirculatory System.

Yohei Rosen, Kivilcim Doganyigit, Santhosh Arul, Eliot Wachtel, Drew Ehrlich, Vaishnavi Venuturimilli, Matilda Mouzaya, Sophia Oriaku, Bi Ndiforchu, Gregory Kaurala and 10 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yohei RosenUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0002-3870-2169
Kivilcim DoganyigitUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0009-0003-4607-9594
Santhosh ArulDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, California, 94143, USA.ORCID 0000-0002-9617-1319
Eliot WachtelDepartment of Electrical and Computer Engineering, University of California, Santa Cruz, Santa Cruz, California, 95064, USA.
Drew EhrlichUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0001-6794-6800
Vaishnavi VenuturimilliUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.
Matilda MouzayaUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.
Sophia OriakuUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.
Bi NdiforchuUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.
Gregory KauralaUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0009-0007-7605-889X
Sebastian HernandezUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0009-0000-8811-8596
Maryam MoarefianUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0002-1875-0614
Hunter SchweigerUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0003-0399-9481
Ariana CisnerosUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0001-5539-0614
Mojtaba ZeraatkarUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0003-1249-8232
Jinghui GengUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0002-3431-9568
Mohammed A Mostajo-RadjiUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0002-1634-7514
Ethan WinklerDepartment of Neurological Surgery, University of California, San Francisco, San Francisco, California, 94143, USA.ORCID 0000-0002-7908-7107
David HausslerUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0003-1533-4575
Mircea TeodorescuUC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, 95060, USA.ORCID 0000-0001-7085-5248

Funding

Nanoparticle Tracking Analyzer (NTA) for the Center for Live Cell GenomicsRM1HG011543 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, SALAMA, SOFIE REDA · 2021 to 2025
$12.0M
Data Resource and Administrative Coordination Center for the Scalable and Systematic Neurobiology of Psychiatric and Neurodevelopmental Disorder Risk Genes ConsortiumU24MH132628 · NIMH · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI DAVID H HAUSSLER, Tomasz Nowakowski · 2023 to 2026
$7.9M
IRACDA at UCSC and CSUMBK12GM139185 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI FORSBERG, CAMILLA, HINCK, LINDSAY E · 2020 to 2024
$4.1M
Human Brain Single-Cell Genomics ExplorerU24NS146314 · NINDS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HAUSSLER, DAVID H, ZHU, JINGCHUN · 2025 to 2025
$3.7M
UCSC Graduate Program in Genome SciencesT32HG012344 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Angela Norie Brooks, Christopher Vollmers · 2022 to 2026
$1.5M
NHGRI NIH HHS RM1 HG011543NHGRI NIH HHS T32 HG012344NIGMS NIH HHS K12 GM139185NIMH NIH HHS U24 MH132628NINDS NIH HHS U24 NS146314
6 · The paper itself

Abstract

Organoids are powerful tools for studying development and disease, offering realistic organ-like human and animal tissues and facilitating experimental observation compared to live animal models. However, traditional organoid culture methods require a humidified incubator. This requirement complicates culture due to evaporative losses and restricted access to instrumentation, hindering the potential of organoids as physiologically accurate models easily subjected to detailed experimental observation. We introduce a compact, automated, sealed, incubator-free recirculatory organoid culture platform that replaces the air-liquid interface with a nonporous polymer gas exchanger and a liquid-phase gas buffer. This design prevents evaporation and stabilizes oxygen, pH, and osmolarity without feedback control. It enables single-actuator media exchange, simplifying automation. Dispensing with the incubator, we improve access for instruments such as live cell microscopes. We demonstrate compatibility with continuous multi-week live imaging of vascular organoids and show that brain organoids in this system maintain metabolic viability, structural fidelity, and electrophysiological activity comparable to traditional shaker-based cultures in an incubator.

Identifiers

PMID40950033
PMCPMC12424846

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.