Evidence map›Paper›PMID 40949964›Full record

ArticlebioRxiv : the preprint server for biology2025

Loss of TET function in T regulatory cells yields ex-Treg cells biased toward T follicular helper cells, causing autoimmune diseases through autoantibody production.

Kazumasa Suzuki, Leo J Arteaga-Vazquez, Bruno Villalobos Reveles, Lot Hernández-Espinosa, Isaac F López-Moyado, Atsushi Onodera, Daniela Samaniego-Castruita, Ferhat Ay, Arlet Lara-Custodio, Patrick G Hogan and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Kazumasa SuzukiCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.ORCID 0000-0002-9342-1300
Leo J Arteaga-VazquezCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Bruno Villalobos RevelesCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Lot Hernández-EspinosaCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Isaac F López-MoyadoCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Atsushi OnoderaInstitute for Advanced Academic Research (IAAR), Chiba University, Chiba, 263-8522, Japan.
Daniela Samaniego-CastruitaCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Ferhat AyCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Arlet Lara-CustodioCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Patrick G HoganCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Hugo SepulvedaCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.
Anjana RaoCenter for Autoimmunity and Inflammation, La Jolla Institute for Immunology, La Jolla, CA, 92037, USA.

Funding

SIGNAL TRANSDUCTION AND GENE INDUCTION IN T LYMPHOCYTESR01AI040127 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI HOGAN, PATRICK, RAO, ANJANA · 1996 to 2025
$13.3M
The TET-DNMT-ASXL1-OGT axis: relevance to clonal hematopoiesis, heterochromatin integrity and cancerR35CA210043 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Anjana Rao · 2016 to 2026
$10.6M
NFAT, bZIP proteins, and transcriptional programs in lymphocytesR01AI109842 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Patrick Hogan, Anjana Rao · 2014 to 2026
$8.6M
Investigating the role of TET deficiency in promoting T cell expansion and inflammationR01AI128589 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI RAO, ANJANA · 2017 to 2025
$5.3M
NovaSeq5000 High Throughput SequencerS10OD025052 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SEUMOIS, GREGORY · 2018 to 2018
$832k
Automated Multiscale Super-resolution Confocal MicroscopeS10OD030417 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI KIOSSES, BILL WILLIAM · 2022 to 2022
$514k
FACSAria II Cell SorterS10RR027366 · NCRR · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI CROFT, MICHAEL · 2011 to 2011
$514k
NFAT, bZIP proteins, and transcriptional programs in lymphocytesR56AI109842 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI HOGAN, PATRICK, RAO, ANJANA · 2019 to 2019
$414k
NCI NIH HHS R35 CA210043NCRR NIH HHS S10 RR027366NIAID NIH HHS R01 AI040127NIAID NIH HHS R01 AI109842NIAID NIH HHS R01 AI128589NIAID NIH HHS R56 AI109842NIH HHS S10 OD025052NIH HHS S10 OD030417
6 · The paper itself

Abstract

T regulatory cells (Treg cells) express the transcription factor FOXP3 and maintain immune homeostasis by attenuating effector responses. Treg cells are prone to lose FOXP3 and convert to pathological 'ex-Treg' cells under conditions of strong or chronic inflammation. One mechanism for loss of FOXP3 expression involves increased DNA methylation of intronic enhancers

Identifiers

PMID40949964
PMCPMC12424951

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.