Evidence map›Paper›PMID 40942063›Full record

ArticleMolecules (Basel, Switzerland)2025

A Unique Trimeric Assembly of Human Dishevelled 1 PDZ Domain in Crystal: Implication of Homo- and Hetero-Oligomerization During Wnt Signaling Process.

Shotaro Yasukochi, Nobutaka Numoto, Kiminori Hori, Takeshi Tenno, Emi Hibino, Nobutoshi Ito, Hidekazu Hiroaki

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Shotaro YasukochiLaboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Furocho, Chikusa, Nagoya, Aichi 464-8601, Japan.
Nobutaka NumotoLaboratory of Structural Biology, Institute of Science Tokyo, 1-5-45, Yushima Bunkyo-ku, Tokyo 113-8516, Japan.ORCID 0000-0001-6113-9792
Kiminori HoriLaboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Furocho, Chikusa, Nagoya, Aichi 464-8601, Japan.ORCID 0009-0007-0933-9608
Takeshi TennoLaboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Furocho, Chikusa, Nagoya, Aichi 464-8601, Japan.ORCID 0009-0008-0648-1622
Emi HibinoLaboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Furocho, Chikusa, Nagoya, Aichi 464-8601, Japan.ORCID 0000-0002-0846-8842
Nobutoshi ItoLaboratory of Structural Biology, Institute of Science Tokyo, 1-5-45, Yushima Bunkyo-ku, Tokyo 113-8516, Japan.ORCID 0000-0003-0839-0384
Hidekazu HiroakiLaboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Furocho, Chikusa, Nagoya, Aichi 464-8601, Japan.ORCID 0000-0003-1621-5893

Funding

Japan Society for the Promotion of Science 24K02145Naito Foundation FY2021Princess Takamatsu Cancer Research Fund 15-24726
6 · The paper itself

Abstract

Wnt/β-catenin signaling is hyper-activated in several cancer cells and cancer stem cells. Dishevelled/Dvl is a key adapter protein that acts as a bridge between the Wnt receptor Frizzled (Fzd) and other cytosolic factors. In detail, the C-terminal cytosolic region is the ligand of the PSD-95, disks large, and zonula occludens-1 (PDZ) domain of Dvl. Therefore, the PDZ domain (Dvl-PDZ) is thought to be a potential drug target. In this paper, we determined the first crystal structure of the PDZ domain of human Dvl1 (hDvl1-PDZ) at a 2.4 Å resolution. The domain was adapted into a unique trimeric form in which all the canonical ligand-binding clefts were occupied by the β2-β3 loop of the neighbor molecule, like an auto-inhibiting trimer. We used solution nuclear magnetic resonance (NMR) experiments to assess the presence of the self-associated oligomer of hDvl1-PDZ in the solution. Introducing the Ala substitution at Asp 272, the key residue of the β2-β3 loop, partly abolished the concentration-dependent chemical shift change, which suggests that this residue is one of the key residues for formation. Based on these observations, we propose an auto-inhibiting trimer formation of Dvl-PDZ in a Dvl-Axin hetero-oligomerization model of Wnt/β-catenin signal transduction.

Indexed as

Dishevelled ProteinsPDZ DomainsProtein MultimerizationWnt Signaling PathwayCrystallography, X-RayHumansModels, MolecularProtein BindingDishevelled ProteinsDVL1 protein, humanauto-inhibiting trimerDvl-Axin hetero-oligomerizationligand-binding cleftliquid–liquid phase separationPDZ domaintrimeric assembly

Identifiers

PMID40942063
PMCPMC12430135

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.