Evidence map›Paper›PMID 40939810›Full record

ArticleJournal of neuroscience methods2025

X-ray diffraction reveals alterations in mouse somatosensory cortex following sensory deprivation.

Sasha Murokh, Ezekiel Willerson, Alexander Lazarev, Pavel Lazarev, Lev Mourokh, Joshua C Brumberg

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sasha MurokhStuyvesant High School, 345 Chambers Street, New York, NY 10282, USA; Matur UK Ltd., 5 New Street Square, London EC4A 3TW, UK.
Ezekiel WillersonDepartment of Psychology, Queens College of the City University of New York, 65-30 Kissena Blvd, Flushing, NY 11367, USA; Graduate Center of the City University of New York, 365 5th Ave, New York, NY 10016, USA.
Alexander LazarevArion Diagnostics, Inc., 911 Mustang Ct, Petaluma, CA 94954, USA.
Pavel LazarevMatur UK Ltd., 5 New Street Square, London EC4A 3TW, UK; Arion Diagnostics, Inc., 911 Mustang Ct, Petaluma, CA 94954, USA.
Lev MourokhGraduate Center of the City University of New York, 365 5th Ave, New York, NY 10016, USA; Arion Diagnostics, Inc., 911 Mustang Ct, Petaluma, CA 94954, USA; Department of Physics, Queens College of the City University of New York, 65-30 Kissena Blvd, Flushing, NY 11367, USA.
Joshua C BrumbergDepartment of Psychology, Queens College of the City University of New York, 65-30 Kissena Blvd, Flushing, NY 11367, USA; Graduate Center of the City University of New York, 365 5th Ave, New York, NY 10016, USA. Electronic address: Joshua.brumberg@qc.cuny.edu.

Funding

Microglial interactions with the Perineuronal NetSC3GM122657 · NIGMS · QUEENS COLLEGE · PI BRUMBERG, JOSHUA CRAIG · 2017 to 2025
$920k
NIGMS NIH HHS SC3 GM122657
6 · The paper itself

Abstract

backgroundSensory experience impacts brain development. In the mouse somatosensory cortex, sensory deprivation via whisker trimming induces reductions in the perineuronal net, the size of neuronal cell bodies, the size and orientation of dendritic arbors, the density of dendritic spines, and the level of myelination, among other effects. NEW

methodsUsing a custom-developed laboratory diffractometer, we measured the X-ray diffraction patterns of mouse brain tissue to establish a novel method for examining nanoscale brain structures. Two groups of mice were examined: a control group and one that underwent 30 days of whisker-trimming from birth an established method of sensory deprivation that affects the mouse barrel cortex (whisker sensory processing region of the primary somatosensory cortex). Mice were perfused, and primary somatosensory cortices were isolated for immunocytochemistry and X-ray diffraction imaging.

resultsX-ray images were characterized using a specially developed machine-learning approach, and the clusters that correspond to the two groups are well separated in principal components space. We obtained the perfect values for sensitivity and specificity, as well as for the receiver operator curve classifier. COMPARISON WITH EXISTING

methodsNew machine-learning approaches allow for the first time x-ray diffraction to identify cortex that has undergone sensory deprivation without the use of stains.

conclusionsWe hypothesize that our results are related to the alteration of different nanoscale structural components in the brains of sensory deprived mice. The effects of these nanoscale structural formations can be reflective of changes in the micro- and macro-scale structures and assemblies with the neocortex.

Indexed as

Sensory DeprivationSomatosensory CortexX-Ray DiffractionAnimalsMachine LearningMaleMiceMice, Inbred C57BLVibrissaeBarrel cortexPerineuronal netSensory deprivationX-ray diffraction

Identifiers

PMID40939810
PMCPMC12462684

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.