Evidence map›Paper›PMID 40939595›Full record

ArticleStem cell reports2025

Unraveling the matrisome signatures of quiescent and activated muscle stem cells.

Emilie Guillon, Hisoilat Bacar, Laurent Gilquin, Takako Sasaki, Philippos Mourikis, Florence Ruggiero

Abstract read
In one paragraph

Article in Stem cell reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Emilie GuillonInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, ENS de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, Lyon, France.
Hisoilat BacarInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, ENS de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, Lyon, France.
Laurent GilquinInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, ENS de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, Lyon, France.
Takako SasakiDepartment of Biochemistry II Oita University, Oita, Japan.
Philippos MourikisUniversity Paris Est Creteil, INSERM, IMRB, F-94010 Créteil, France.
Florence RuggieroInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, ENS de Lyon, CNRS UMR5242, Université Claude Bernard Lyon 1, Lyon, France. Electronic address: florence.ruggiero@ens-lyon.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The extracellular matrix (ECM) forms a dynamic microenvironment, known as the "niche," that influences muscle stem cell (MuSC) behavior. Its composition and topology remain underexplored. Using bioinformatics analysis of publicly available transcriptomic data, we profiled the matrisome of skeletal muscle-resident cells and identified quiescent MuSCs as key ECM producers. Their matrisome includes novel markers such as the basement membrane zone genes Col19a1 and Lama3, ECM assembly regulators Thsd4 and Aebp1, and notably, matrisome genes linked to neurogenesis. Light-sheet immunofluorescence microscopy of selected ECM components in isolated murine myofiber bundles revealed niche-specific ECM components associated with MuSCs. Upon activation, these cells shifted their gene expression, downregulating niche-associated ECM genes while upregulating those involved in basement membrane disruption and cell motility. These findings identify distinct matrisome signatures in quiescent and activated MuSCs, emphasizing the critical role of ECM in locally regulating MuSC states and highlighting its therapeutic potential for muscle regeneration.

Indexed as

Extracellular MatrixMuscle, SkeletalStem CellsAnimalsBasement MembraneExtracellular Matrix ProteinsGene Expression ProfilingMiceStem Cell NicheTranscriptomeExtracellular Matrix Proteinsbioinformaticsextracellular matrixmatrisomemuscle stem cellsquantitative image analysisstem cell niche

Identifiers

PMID40939595
PMCPMC12790712

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.