Evidence map›Paper›PMID 40938745›Full record

ArticleSTAR protocols2025

Protocol for chromatin immunoprecipitation and hematovascular function assays with differentiated mouse embryonic stem cells.

Raham Lee, Minseong Kim, Changwon Park

Abstract read
In one paragraph

Article in STAR protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Raham LeeDepartment of Molecular and Cellular Physiology, Louisiana State University Health Science Center, Shreveport, LA 71103, USA.
Minseong KimDepartment of Molecular and Cellular Physiology, Louisiana State University Health Science Center, Shreveport, LA 71103, USA.
Changwon ParkDepartment of Molecular and Cellular Physiology, Louisiana State University Health Science Center, Shreveport, LA 71103, USA. Electronic address: changwon.park@lsuhs.edu.

Funding

Mechanisms of ER71/ETV2-regulated VascularizationR01HL119291 · NHLBI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI PARK, CHANGWON · 2013 to 2022
$3.2M
NHLBI NIH HHS R01 HL119291
6 · The paper itself

Abstract

Here, we present a protocol for mouse embryonic stem cells (mESCs) as a valuable model for studying developmental processes. This protocol details step-by-step differentiation of mESCs into embryoid bodies (EBs), followed by single-cell dissociation and chromatin preparation for chromatin immunoprecipitation (ChIP), including crosslinking and sonication. We also describe procedures to assess hematovascular differentiation including EB vascular sprouting assay, hematopoietic colony formation assay, and flow cytometry. This protocol enables the investigation of the dynamic interplay between epigenetic modifications and hematovascular lineage commitment during mESC differentiation. For complete details on the use and execution of this protocol, please refer to Kim et al.

Indexed as

Cell DifferentiationChromatin ImmunoprecipitationMouse Embryonic Stem CellsAnimalsEmbryoid BodiesFlow CytometryMiceCell-based AssaysCell BiologyCell cultureCell DifferentiationCell isolationChIPChromatin immunoprecipitationFlow CytometryGene ExpressionMicroscopyMolecular BiologyStem Cells

Identifiers

PMID40938745
PMCPMC12491523

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.