Evidence map›Paper›PMID 40938703›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

The

Adam M Bayless, Lijiang Song, Mitchell Sorbello, Sam C Ogden, Tyler S Todd, Alice Flint, Natsumi Maruta, Jedidiah Tulu, Mikhail Drenichev, Vardis Ntoukakis and 8 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Plant NLRs are getting into higher-order architectures.The Plant journal : for cell and molecular biology · 2026
    Review
  2. Molecular mechanisms of plant NLR activation and signalling.The Plant journal : for cell and molecular biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Adam M Bayless *Department of Biology, Colorado State University, Fort Collins, CO 80523.ORCID 0000-0002-8773-4482
Lijiang Song *Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom.
Mitchell Sorbello *The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.ORCID 0000-0001-9442-5170
Sam C OgdenDepartment of Biology, Colorado State University, Fort Collins, CO 80523.
Tyler S ToddDepartment of Biology, Colorado State University, Fort Collins, CO 80523.
Alice FlintSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Natsumi MarutaThe University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.
Jedidiah TuluDepartment of Biology, Colorado State University, Fort Collins, CO 80523.
Mikhail DrenichevEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russian Federation.ORCID 0000-0001-7624-8801
Vardis NtoukakisSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.ORCID 0000-0003-0069-6004
Thomas VeInstitute for Biomedicine and Glycomics, Griffith University, Gold Coast, QLD 4215, Australia.
Mehdi MobliAustralian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, QLD 4072, Australia.ORCID 0000-0003-2420-4262
Li WanNational Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
Qingli LiuSeeds Research, Syngenta Crop Protection, Durham, NC 27709.
Jeffery L DanglDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0003-3199-8654
Bostjan KobeThe University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Diseases Research Centre and Institute for Molecular Bioscience, Brisbane, QLD 4072, Australia.ORCID 0000-0001-9413-9166
Murray GrantSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.
Marc T NishimuraDepartment of Biology, Colorado State University, Fort Collins, CO 80523.ORCID 0000-0003-4666-6900

Funding

Mechanisms of Toll/interleukin1 receptor (TIR) domain function in cell death and immunityR35GM158290 · NIGMS · COLORADO STATE UNIVERSITY · PI Marc Tad Nishimura · 2025 to 2026
$752k
Chinese Academy of Sciences Strategic Priority Research Program XDB27040214Department of Education and Training | Australian Research Council (ARC) DP220102832Department of Education and Training | Australian Research Council (ARC) DP250100998Department of Education and Training | Australian Research Council (ARC) FL180100109Department of Education and Training | Australian Research Council (ARC) FT200100572Federal Government | DHAC | National Health and Medical Research Council (NHMRC) 1196590Federal Government | DHAC | National Health and Medical Research Council (NHMRC) 2025931HHMI (HHMI) N/ANIGMS NIH HHS R35 GM158290NSF (NSF) IOS-1758400Syngenta Crop Protection N/AUKRI | Biotechnology and Biological Sciences Research Council (BBSRC) BB/V00400X/1
6 · The paper itself

Abstract

The TIR (Toll/interleukin-1 receptor) domain is an ancient protein module that functions in immune and cell death responses across the Tree of Life. TIR domains encoded by plants and prokaryotes function as enzymes to produce diverse small molecule immune signals. Plant genomes can encode hundreds of TIR-domain containing proteins-many of which confer important agricultural disease resistance as TIR-NLR (nucleotide-binding, leucine-rich repeat) immune receptors. Despite their importance, how natural variation influences TIR enzymatic output and immunity-associated cell death is largely unexplored. We assayed a complete collection of the TIR domains of

Indexed as

ArabidopsisArabidopsis ProteinsReceptors, Interleukin-1Cell DeathPlant ImmunityProtein DomainsSignal TransductionArabidopsis ProteinsReceptors, Interleukin-1artificial proteininnate ImmunityNBS-LRRplant Immunitytoll/interleukin-1 receptor domain

Identifiers

PMID40938703
PMCPMC12452931

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.