Evidence map›Paper›PMID 40938073›Full record

ArticleInvestigative ophthalmology & visual science2025

Proteomic Characterization of the Rhesus Macaque Lens Nucleus: Similarity to Human Lens, Age Effects on Protein Solubility, and Trends in Post-Translational Modifications.

Billy L Hayden, Owen Kelley, Keith Zientek, Ashok P Reddy, Phillip A Wilmarth, Rachel Munds, Michael J Montague, Melween I Martinez, Gadi Wollstein, James P Higham and 5 more

Abstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Aging of Nonhuman Primate Eyes Is Sexually Dimorphic.Investigative ophthalmology & visual science · 2026
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Billy L HaydenDepartment of Biology, High Point University, High Point, North Carolina, United States.
Owen KelleyDepartment of Biology, High Point University, High Point, North Carolina, United States.
Keith ZientekProteomics Shared Resource, Oregon Health & Science University, Portland, Oregon, United States.
Ashok P ReddyProteomics Shared Resource, Oregon Health & Science University, Portland, Oregon, United States.
Phillip A WilmarthProteomics Shared Resource, Oregon Health & Science University, Portland, Oregon, United States.
Rachel MundsDepartment of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada.
Michael J MontagueDepartment of Neuroscience, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Melween I MartinezCayo Biobank Research Unit, Department of Neuroscience, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Gadi WollsteinAdvanced Center of Ophthalmic Research in Neuroimaging, Wills Eye Hospital, Philadelphia, Pennsylvania, United States.
James P HighamCayo Biobank Research Unit, Department of Neuroscience, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Arturo O Barron ArrambideDepartment of Ophthalmology, SUNY Downstate Health Sciences University, Brooklyn, NY, United States.
John DaniasDepartment of Ophthalmology, SUNY Downstate Health Sciences University, Brooklyn, NY, United States.
Amanda D MelinDepartment of Anthropology and Archaeology, University of Calgary, Calgary, Alberta, Canada.
Larry L DavidProteomics Shared Resource, Oregon Health & Science University, Portland, Oregon, United States.
Jeremy A WhitsonDepartment of Biology, High Point University, High Point, North Carolina, United States.

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Translational Science InitiativeP40OD012217 · OD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI CARLOS A SARIOL · 2012 to 2026
$40.4M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI John Peter Campbell · 1995 to 2026
$19.4M
Single cell transcriptional and epigenomic atlas of the macaque brain across the lifespanU01MH121260 · NIMH · UNIVERSITY OF WASHINGTON · PI PLATT, MICHAEL L, SHENDURE, JAY ASHOK · 2019 to 2021
$4.8M
Social modifiers of the pace of aging across multiple domains and tissuesR01AG060931 · NIA · UNIVERSITY OF WASHINGTON · PI BRENT, LAUREN JOHANNA NICOLE, HIGHAM, JAMES P · 2019 to 2023
$3.6M
Neurogenomics of Vulnerability and Resilience to Mental Health Syndromes in Response to Extreme Life EventsRF1MH118203 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI MONTAGUE, MICHAEL JAMES, PLATT, MICHAEL L · 2025 to 2025
$3.3M
Longitudinal Ocular Changes in Naturally Occurring Glaucoma Animal ModelR01EY035174 · NEI · WILLS EYE HEALTH SYSTEM · PI Gadi Wollstein · 2023 to 2026
$2.9M
Impacts of hurricanes and social buffering on biological aging in a free-ranging animal modelR01AG084706 · NIA · NEW YORK UNIVERSITY · PI Lauren Johanna Nicole Brent, James P Higham · 2023 to 2026
$2.5M
Neurogenomics of Vulnerability and Resilience to Mental Health Syndromes in Response to Extreme Life EventsR01MH118203 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI PLATT, MICHAEL L · 2019 to 2023
$1.9M
NCI NIH HHS P30 CA069533NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY035174NIA NIH HHS R01 AG060931NIA NIH HHS R01 AG084706NIH HHS P40 OD012217NIMH NIH HHS R01 MH118203NIMH NIH HHS RF1 MH118203NIMH NIH HHS U01 MH121260
6 · The paper itself

Abstract

Purpose: Proteomes of lens nuclei from young (4 years old) and old (15-16 years old) rhesus macaques (Macaca mulatta) were analyzed to determine similarity of the proteomic profile to that of human lenses, age-related differences in protein solubility, and association of various post-translational modifications with age and protein solubility. Methods: Lens core proteins were separated into water-soluble and water-insoluble fractions using aqueous buffer and centrifugation. The water-insoluble fraction was solubilized using sodium dodecyl sulfate (SDS). Proteins were processed using S-trap columns, and peptide digests were analyzed using high-resolution, label-free data-dependent acquisition (DDA) proteomics. Open modification searches were performed using MSFragger to identify possible post-translational modifications (PTMs). The number of modified peptide tandem mass spectra confidently assigned to samples by age or solubility were compared to find PTMs with statistically significant count differences. Results: The overall proteomic profile of rhesus macaque lenses was very similar to human lenses, consisting of 80.2% crystallins, 1.1% beaded filament proteins, and 18.7% other proteins. The crystallin fraction consisted of 27% alpha crystallins, 67.6% beta/gamma crystallins, and 5.4% taxon-specific psi crystallin. Glycolytic enzymes, beta/gamma crystallins, and a few glutathione-related enzymes were found to have age-related shifts to the water-insoluble fraction. There were significant differences in deamidation, dioxidation, carbamylation, carboxymethylation, and trioxidation based on age and/or solubility of proteins. Conclusions: These data indicate a high level of conformity between rhesus macaque and human lens proteomes, and a few key differences. We identified several age-related differences in protein solubility and PTM that may contribute to lens pathology.

Indexed as

AgingCrystallinsEye ProteinsLens, CrystallineLens Nucleus, CrystallineProtein Processing, Post-TranslationalProteomeProteomicsAnimalsHumansMacaca mulattaSolubilityTandem Mass SpectrometryCrystallinsEye ProteinsProteome

Identifiers

PMID40938073
PMCPMC12439503

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.